Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq51664 223 3e-53 seq120612 98.7 1e-15 >seq51664 Length=13532 Score = 223 bits (246), Expect = 3e-53 Identities = 1029/1608 (64%), Gaps = 51/1608 (3%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||| | |||||| ||||||||| ||| ||||| | ||||| | |||| Sbjct 12322 TACAACTTCTTCGGCTTCAAGACTCTGGAGCGGTCCTACCTGTTGAAGATCAACGGCAAA 12263 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||||||||| || |||| ||| | || ||| ||||||| ||| ||| Sbjct 12262 GTGGCCGAGCGACCGCAGCACATGCTCATGAGAGTGGCCGTCGGGATCCACAAGATGGAC 12203 Query 93838 AT-GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGG---GACAAGAGGTATACCATGGC 93893 || | || | ||| | | | || || ||| | || ||| ||| ||| || Sbjct 12202 ATCGACGCAGCCATTGAGA-CGTACA---ACCTGCTGTCAGAGAAGTGGTTCACCCACGC 12147 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 | |||| || || |||||||| || ||| ||||||| |||| || |||||| | Sbjct 12146 CTCCCCCACGCTCTTCAACGCAGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCT 12087 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 | | || | |||| |||| || |||| ||||| || ||| | || || | Sbjct 12086 CGCCATGAAAGACGACAGCATCGAAGGCATTTACGACACGCTGAAGCAATGCGCCCTGGT 12027 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTG----CCAGGGGTT 94069 ||| |||| || |||||||| || ||| | | | | | | | | ||| Sbjct 12026 CTCCAAATCAGCCGGGGGAATTGGT----GTGGCGATAAGCTGCATCAGAACAACGGGGA 11971 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 ||||||| ||| ||||| |||| ||||||||| ||||||| ||||| | || | || Sbjct 11970 GCTACATCGCCGGCACCAACGGCAACTCCAACGGGATCGTCCCCATGCTGAGAGTTTACA 11911 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 ||||| |||| || ||||| |||||||| || | ||| || | ||||| | | Sbjct 11910 ACAACACGGCACGTTACGTCGACCAGGGCGGCAACAAGAGACCAGGAGCCTTCGCCATGT 11851 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | || |||||||||||||| |||||| | ||| | || || |||||| ||| | Sbjct 11850 ACCTGGAGCCCTGGCACGCCGACGTGTTTGACTTCCTGGAGCTAAAGAAGAACACCGGAA 11791 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || | |||| ||||| ||||| ||||||| || ||| | || ||||| || |||| Sbjct 11790 AGGAGGAGCAGAGAGCCAGGGACCTTTTCTACGGCCTGTGGATCCCCGACCTGTTCATGA 11731 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | | || |||| ||| | |||| ||| | |||||||| || || || || || Sbjct 11730 AGAGAGTGGAGAGCAACGAGGACTGGTCTCTGATGTGTCCCAACGAGTGCCCAGGGTTGG 11671 Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 ||| || || | || ||| | | || | || || |||||| ||| Sbjct 11670 ACGAGTGCTGGGGGGAGGAGTTCGAAAAGCTCTACACCTCCTATGAGAAGCAGGGGAAGT 11611 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGA-TCAG--ATCGTGGACGTACAGGTGG 94486 || | || || | ||| | || ||||| | | | |||| | | ||| | Sbjct 11610 TCAAGCGCGTGGTGAAGGCTCAGCAGTTGTGGCACGCCGTTATCGAGTCC---CAGACAG 11554 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 | || || ||||| ||||| ||| ||| ||| | |||| ||| |||||| ||| Sbjct 11553 AAACTGGCACGCCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAGA 11494 Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 | || || |||||| | || |||||||| || || ||||||| || | | Sbjct 11493 ATCTGGGCACCATCAAGTCCAGCAACCTGTGCACAGAAATCATCGAGTACACCAGCCACG 11434 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 | ||| | || |||||||| |||| ||| || | || || | || || | || Sbjct 11433 ATGAGGTAGCGGTGTGTAATCTGGCCTCAAT--TGCGCTCAACAT--GTACGTCACCCCG 11378 Query 94667 ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAG-GATGGTC 94725 || ||| || || || | | || | || | ||| || ||| Sbjct 11377 GAGCG--GACT------TTTGA-CTTTAAAAAACTGGCATCTGTGACCAAAGTAATCGTC 11327 Query 94726 TTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCA 94785 ||| |||||| | | ||||| | |||| ||| || || || || ||||| || || Sbjct 11326 AAGAATTTGAACAAGATCATCGAAATTAACTACTATCCAGTGCCCGAAGCGGAAAAGTCC 11267 Query 94786 AACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATG 94845 ||| | || |||| || || || |||||||| ||||| ||||| || | | | Sbjct 11266 AACAAGCGCCACAGGCCGATTGGAATTGGCGTCCAAGGTTTGGCGGATGCCTTCATCCTC 11207 Query 94846 ATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGC 94905 |||||| || | ||| | || || | ||||| | | || ||||| | Sbjct 11206 ATGCGTTACCCGTTCGAAAGCGAAGAGGCTCAGCTGCTGAATATTCAAATCTTCGAGGTC 11147 Query 94906 ATTTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACA 94964 || || ||| ||| | || | | | | | | ||||| | || ||| || | Sbjct 11146 ATCTACCACGCCGCCCTGGAGGCGAGCTG-CGAGCTGGCC---GCCGAGCTCGGCCCCTA 11091 Query 94965 CGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGT 95024 ||| ||| | || || ||| | ||||||| | |||| |||| | |||| Sbjct 11090 CGAGACGTACGCAGGCTCTCCCGTCAGCAAGGGCATCCTGCAGTACGACATGTGGGAGAA 11031 Query 95025 GAAGCCCTCGGGTCTGTACGACTGGGAAGCT-CT--ACGCGCTGAT-GTTATCAAACACG 95080 ||||||| | | ||| |||| ||||||| || | | | ||| | ||| |||| Sbjct 11030 GAAGCCCACCGAACTGCTGGACT-GGAAGCTGCTGAAGGAGAAGATCGCCATC---CACG 10975 Query 95081 GTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTG 95140 | |||| ||| ||||| ||||||| ||||||||||||||||| || |||||||| | Sbjct 10974 GCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGG 10915 Query 95141 GCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCG 95200 ||||||||||||| ||||| ||| |||| |||| | |||| | | |||| ||| ||| Sbjct 10914 GCAACAACGAGTCCATCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCG 10855 Query 95201 GGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGG 95260 | || || | || ||||| || || || ||||||||| || ||||| Sbjct 10854 GAGAGTTTCAGATCGTCAACCCTCATCTGCTCAAAGACCTGACGGAGAGAGGGCTGTGGA 10795 Query 95261 GTGACAAGGTCAAGAACCAACTGCTACGCGC-CAACGGCTCCGTCCAG 95307 | || || | |||||||| ||| | ||| | |||||| ||| | ||| Sbjct 10794 GCGAGGAGATGAAGAACCAGCTGAT-CGCTCACAACGGGTCCATTCAG 10748 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 93331 GTCATGTTCGACAAGATCACTACCAGGGTGCGCAAACTTTGCGAGGGTCTGGACTCTGAC 93390 |||||||||||||| |||||| | | | || || ||| | || ||| |||||||| Sbjct 12712 GTCATGTTCGACAAAATCACTTGTCGCATCCAGAAGCTGTGCTACGGACTGAACTCTGAC 12653 Query 93391 TTCGTGGATCCCGTCGAGGTCACCATGAGAGTGAATCAGGGAATATATGCCGGGGTCACA 93450 ||||||||||| | | || ||||||||| |||| ||||| | || ||| ||||| Sbjct 12652 TTCGTGGATCCGGCCCAGATCACCATGAAGGTGATCCAGGGTTTGTACAGCGGCGTCACC 12593 Query 93451 ACTGTCGAGCTCGATCTTCTGGCCGCGGAGACTTGTGCCTTCATGAGTACGAATCACCCG 93510 || || |||||||| ||||| || |||| ||| | | || || ||||| Sbjct 12592 ACCGTGGAGCTCGACACGCTGGCTGCTGAGATCACCGCCACTCTCACAACTAAGCACCCC 12533 Query 93511 GACTACTCCATTTTGGCTGCTCGAATC 93537 |||||| |||| | ||||| || ||| Sbjct 12532 GACTACGCCATACTCGCTGCACGGATC 12506 >seq120612 Length=9325 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 || ||||||| ||| ||||| |||||||||||||||| || ||||| || |||||| Sbjct 3535 CATGGTGTGAGGAACAGTCTGCTCTTGGCCCCCATGCCCACAGCTTCCACCGCACAGATC 3594 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||||||||| | || | | |||| |||| | |||| | | |||||||| Sbjct 3595 CTGGGCAACAACGAGTCCATTGAGGCTTACACCAGCAACATCTACACCCGCAGGGTGCTC 3654 Query 95197 GCCGGGGAATTCCCCGTCATCA 95218 | ||||| || | |||| || Sbjct 3655 TCTGGGGAGTTTCAGGTCAGCA 3676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493693878910080