Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq51664 167 2e-36 >seq51664 Length=13532 Score = 167 bits (184), Expect = 2e-36 Identities = 904/1428 (63%), Gaps = 44/1428 (3%) Strand=Plus/Plus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | ||| | ||| ||||| ||||| || || || || |||| || || Sbjct 10881 TTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTG 10940 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGA-ATGTCGTCCTTCAA 153193 ||||| |||| || || |||| || |||||| | | | || | ||||||| Sbjct 10941 GGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTG-GATGGCGATCTTCTCCTTCAG 10999 Query 153194 CGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCC 153253 | || ||| ||| ||| | | || || | ||||||||||||||| | | || Sbjct 11000 CAGCTTCCAGTCCAGCAGTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGGATGCC 11059 Query 153254 TCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCGC 153312 ||| ||||| ||| || |||| |||| |||| || | |||||| |||| Sbjct 11060 CTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGA-GCTCGGCGGCCAGCTCGC 11118 Query 153313 AGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCG 153372 |||| ||||| || ||| | | ||| ||| ||| |||||| |||| || | | Sbjct 11119 AGCTCGCCTCCAGGGCGGCGTGGTAGATGACCTCGAAGATTTGAATATTCAGCAGCTGAG 11178 Query 153373 CTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATAC 153432 | |||||||| ||| |||| |||| || | ||||| || |||| ||| |||| | Sbjct 11179 CCTCTTCGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGC 11238 Query 153433 CGACGCCGATGGGTCGATGCTTCTCGTTGC-----TGCGCCTCGCGCTCGCTATGGGATA 153487 | | || || || | || || |||| | ||| ||| || | ||||| Sbjct 11239 CAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACT-----GGATA 11293 Query 153488 GTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAG 153547 || || ||||| || ||||| | || || | ||||| || | | || Sbjct 11294 GTAGTTAATTTCGATGATCTTGTTCAAATTCTTGACGATTACTTTGGTCACAGATGCCAG 11353 Query 153548 TTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGC 153607 ||| | || ||| | ||| || || | | ||| | || | ||||| || || Sbjct 11354 TTTTTTAAAGTCAAAAGTCCGCTC--CGGGGTG-ACGTACATGTTGAGCGCAATTGAGGC 11410 Query 153608 CAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT 153667 ||||||||| || || ||| ||| | | |||||| | ||| || | ||| ||||| Sbjct 11411 CAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCGATGATTTCTGTGCACAGGTT 11470 Query 153668 GCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAA 153727 |||| | || ||| ||||| ||| || || ||||| || | ||||| ||||||||| | Sbjct 11471 GCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTA 11530 Query 153728 GAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATG---CAGGTC 153784 |||||||| || ||| || || || | | |||||| || || | Sbjct 11531 CAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACT---CGATAACGGCGTGCCACAACTG 11587 Query 153785 CTGCGCTCGCACC-CGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCT 153843 ||| || |||| ||| || | |||| |||| || ||| || | Sbjct 11588 CTGAGCCTTCACCACGC-GCTTGAACTTCCCCTGCTTCTCATAGGAGGTGTAGAGCTTTT 11646 Query 153844 CAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACC 153903 | ||||| || || |||| ||| | | || || |||| | ||||||||||| |||| Sbjct 11647 CGAACTCCTCCCCCCAGCACTCGTCCAACCCTGGGCACTCGTTGGGACACATCAGAGACC 11706 Query 153904 ACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGA 153963 | |||| | | || | ||||||||| || || | ||| || |||| | | Sbjct 11707 AGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAAA 11766 Query 153964 GGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATA 154021 |||| | || | ||| |||||| || |||| || || | || | | | | Sbjct 11767 GGTCCCTGGCTCTCTGC--TCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAA 11824 Query 154022 GATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCC 154078 | ||||||||||||||| || | ||| | ||| | ||| ||| | | || ||||| Sbjct 11825 CACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCTCCTGGTCTCTTGTTGCCGCC 11884 Query 154079 CTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGC 154138 ||| ||||||| || || | |||||| | || | || |||||| | | ||| | | Sbjct 11885 CTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGATCCCGTTGGA 11944 Query 154139 GGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTA----- 154193 | |||||||||| ||| | ||| || || ||||||| ||| Sbjct 11945 GTTGCCGTTGGTGCCGGCGATGTAGCTCCC-----CGTTGTTCTGATGCAGCTTATCGCC 11999 Query 154194 ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATG 154253 || ||||| || ||| | | || || | ||||| | |||||| ||| ||| Sbjct 12000 ACACCAATTCCCCCGGCTGATTTGGAGACCAGGGCGCATTGCTTCAGCGTGTCGTAAATG 12059 Query 154254 CCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGC 154313 || |||||||| ||||| | | |||||| ||| || ||| || || || Sbjct 12060 CCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTG 12119 Query 154314 GTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGG 154373 ||||| || ||||| ||||| ||||| || ||| || | || || | | Sbjct 12120 GTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTG 12179 Query 154374 TACGTTTCGATGGCGTCTTCGATAT-CATCGCCGTGAATGCCGAGCGCGACGCGCATGAG 154432 ||||| || ||||| | ||||| | |||| ||| || |||| || || | |||||| Sbjct 12180 TACGTCTCAATGGCTGCGTCGATGTCCATC-TTGTGGATCCCGACGGCCACTCTCATGAG 12238 Query 154433 CATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATA 154480 |||||||||||| || ||||| ||| | || |||||||| || || Sbjct 12239 CATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTA 12286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495229876450560