Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq59648 113 7e-20 seq125785 109 8e-19 seq123429 107 3e-18 seq55935 93.3 6e-14 >seq59648 Length=15200 Score = 113 bits (124), Expect = 7e-20 Identities = 201/290 (69%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || || ||||| | || ||||| || || | | | | || ||||||| | | Sbjct 10763 CCGTCCAGCGATCTGATTGGTAAACGACTCCACGAGGTTGCCGATGCCGTGCTCCGTCAC 10822 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 | ||| || ||| | || || |||| || |||| || | ||| | ||| Sbjct 10823 CACGGAGTTATTGAAGACAAACTGTTTATAGTTGTACTCTTTCTCCTCAATGTGGAAAGT 10882 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||| |||| ||||| |||||| |||| ||||| |||||||||| || || |||||||| Sbjct 10883 ATCGGGCATCAGAGGGTGCCAGTGGTACAGGGTGTTGAACTCGGACGAGATGCGGTTCTG 10942 Query 9612 GTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 |||||| ||| || ||| |||||| | ||| |||||||| | |||| ||||| || Sbjct 10943 GTACTGGAAGCGCTGGT--TGAACAGCAGCTCGGGGTCAAACTTGAGCTTGAAGTTATAG 11000 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||||| || ||||| || || | ||| | ||| || ||||| || || Sbjct 11001 CCGCTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 11050 Score = 89.7 bits (98), Expect = 7e-13 Identities = 165/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || || ||||| || || | | |||||| |||| ||||||| | | || | Sbjct 11617 ATGAGCCGTGTGGTCTGGAAGAGCCTCTCGTCGTCCCAGCCCGGGTGGACCTCCTTCAAC 11676 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 || || || |||| ||||||||||| ||||| ||||||||||||||||| | || || Sbjct 11677 ACGTCACACACCCGGTTGTGTTCTCGTAGCCAGATGGTGGCGTACATCATCAGGCCGGGG 11736 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | || ||| | || | ||||| || ||||| || ||||| || | || | Sbjct 11737 ACCAGGCCGAACGCCTCGTGGCCCACAGCGAAGCGGTGAGGGTCGGGAACGTGAGGAGGG 11796 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || |||| | || ||| || || || |||||||||| || || || | |||| Sbjct 11797 TAGTGCATGTCAACGCCCACCTCCTTTACTGTTGGGGGATACACCTCTCCATCCAGAACC 11856 Query 9967 TG 9968 || Sbjct 11857 TG 11858 >seq125785 Length=15263 Score = 109 bits (120), Expect = 8e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || | |||||| ||||| || || || | || |||||||||||||| |||||||| Sbjct 12582 GTGGCAGATTTCACTATGTCAAAGCCGACTTTGCCTCCGAAGGTGCTGGGCTTCCAGTAA 12523 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || || || ||| ||| ||| ||||| | ||| || || || |||| ||| Sbjct 12522 TCTGGAGAACATATAGGGTTTCCCAGGAGGCCTTTAAGGGAGAAGGGGGCGCCCATCTCT 12463 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAG 9112 || |||||||| || || ||||| || | || | | || | | || |||| ||| Sbjct 12462 ATCATGCTCTCTCCAAATATGGCCCCCTGTCGTGTTCCCTCCAACAGTAAACCAGGGTAA 12403 Query 9113 AGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCT 9167 | ||| ||||| || | ||| || |||| | || | |||| |||||||||| Sbjct 12402 AATTCAACAGCATCAATGTCACCGTAGAATTCCTCAAGCTCGCGGGCTATCTCCT 12348 >seq123429 Length=10729 Score = 107 bits (118), Expect = 3e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || || ||||||||||| ||||||||| | |||||||||||| ||| |||| || Sbjct 3 TCTCCTCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTTGCCAGCAGG 62 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 ||||||| ||| || ||||| |||| ||| | || |||||||| ||||| || || Sbjct 63 CCTTTCAGGGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAAGATACCAGTAGGG 122 Query 9083 CGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 || | |||||| | | | ||| | ||| | || | ||| || | ||| || ||||| Sbjct 123 CGTGCTTTTTCTAGTAAAAGGCCGGGGTAAAACTCCAAAGCATCTATGTCACCGTAGAG 181 >seq55935 Length=8550 Score = 93.3 bits (102), Expect = 6e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || || ||||||||||| ||||||||| | |||||||||||| ||| ||| || Sbjct 8187 TCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTTCCCAGCAGG 8128 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 || |||| ||| || ||||| |||| ||| | || |||||||| || | |||| Sbjct 8127 CCCTTCAGGGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAACAGTCTGTTGGGA 8068 Query 9083 CGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 || | ||| || | | || ||| | ||||| || | ||| || | ||| || ||||| Sbjct 8067 CGTGTTTTCTCCAGCAGGATGCCGGGGTAGAACTCCAAAGCATCTATGTCACCGTAGAG 8009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722222211523200