Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq51664 192 7e-44 seq120612 89.7 6e-13 seq158314 82.4 9e-11 >seq51664 Length=13532 Score = 192 bits (212), Expect = 7e-44 Identities = 846/1310 (65%), Gaps = 52/1310 (4%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | || | | |||| ||||| |||| ||| ||||| |||||| Sbjct 10875 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 10934 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATG-----C 116017 || |||||||| || |||| || |||||||| | ||| || ||| | Sbjct 10935 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCT------CACGCCGTGGATGGCGATC 10988 Query 116018 GT-TCCTTGAGGGCGTCCCAGTC--GTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAA 116074 | ||||| || | |||||| | |||| | | | || | ||||||||| || Sbjct 10989 TTCTCCTTCAGCAGCTTCCAGTCCAGCAGTTCGG--TGGGCTTCTTCTCCCACATGTCGT 11046 Query 116075 ACTGGAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC 116132 |||| ||||| || | | |||| || || || | | ||||| || ||||| | Sbjct 11047 ACTGCAGGATGCCCTTGCTGACG--GGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTC 11104 Query 116133 CTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGC 116192 | |||| ||| |||||||||| ||||| ||||| || || ||| || || || Sbjct 11105 GGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGACCTCGAAGATTTGAAT 11164 Query 116193 ATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGC 116252 ||||| || ||||| ||| || |||| | ||| | || || ||||||| Sbjct 11165 ATTCAGCAGCTGAGCCTCTTCGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGC 11224 Query 116253 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC 116312 | ||||||||| || | ||||| || | || | | | || |||||| || Sbjct 11225 CAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGG 11284 Query 116313 CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGAT 116372 ||| ||||| | || | ||||| | | | || | ||| ||| || || || || | Sbjct 11285 CACTGGATAGTAGTTAATTTCGATGATCTTGTTCAAATTCTTGACGATTACTTTGGTCAC 11344 Query 116373 TTCATGA-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 116431 ||| || |||| | |||||| | || ||| |||| ||| | || | Sbjct 11345 AG-ATGCCAGTTTTTTAAAGTCAAAAGTCCG---CTCCGGGGTGACGTACATGTTGAGCG 11400 Query 116432 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 116491 | ||||| |||||||||||||| | |||||| | |||||||| || ||||| | Sbjct 11401 CAATTGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCGATGATTTCTG 11460 Query 116492 TACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACA 116549 | |||| || || | ||| |||||||||| |||| ||| || ||| |||| || Sbjct 11461 TGCACAGGTTGCTGGA--CTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCA 11518 Query 116550 CGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTT 116609 || || ||||| ||||| |||||||| || || || || ||||||| || || || | Sbjct 11519 GGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACTCGATAACGGCGTG 11578 Query 116610 CCA-TACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGT 116668 ||| || | | | || ||| | ||| ||||| || ||| || |||| Sbjct 11579 CCACAACTGCTGAGCCT-TCACCACGCGCTTGAACTTCCCCTGCTTCTCATAGGAGGTGT 11637 Query 116669 AGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAG 116727 |||| || ||||| || ||| |||| ||| | |||||| || | ||||| Sbjct 11638 AGAGCTTTTCGAACTCCTC-CCCCCAGCACTCGTCCAACCCTGGGCACTCGTTGGGACAC 11696 Query 116728 AAGAGAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGA 116785 | |||||||| | || | | ||| || | ||||||||| ||||| |||||||| | Sbjct 11697 ATCAGAGACCA--GTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACA 11754 Query 116786 GCGCCG-AGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 116843 | |||| |||| || |||| | | ||| || | | || || || | ||| Sbjct 11755 G-GCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTG-TTCTTCTTTAGCTC 11812 Query 116844 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG 116903 || ||||| | | || |||||||| || |||||||||| |||| | | ||| | Sbjct 11813 CAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGA-AGGCTCCTGGTC 11871 Query 116904 AC----GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAA 116959 | || |||||| || || | ||||| ||| | || | ||||| || | Sbjct 11872 TCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGA 11931 Query 116960 TGATACCATCAGATTGGCCATTTGT-CCCCCGAATACGAGACTTGTTGGCTCTGA--CAT 117016 ||| || | || | ||| || || || ||| | | ||| | ||||| || Sbjct 11932 CGATCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTT-GTTCTGATGCAG 11990 Query 117017 CGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGAC 117076 | | || || |||||| ||||| || | || |||| | ||||| | | | || Sbjct 11991 CTT--ATCGCCACACCAATTCCCCCGGCTGATTTGGAGACCAGGGCGCATTGCTTCAGCG 12048 Query 117077 TGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTT 117136 || |||| || || ||||| ||| | || | |||| ||||||||||| |||| | Sbjct 12049 TGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCT 12108 Query 117137 GTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 ||||||| || || ||||||||||| || || | |||||| ||||| Sbjct 12109 GTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC 12158 >seq120612 Length=9325 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||||| | |||| ||||| |||| ||| || || ||||| Sbjct 3638 TAGATGTTGCTGGTGTAAGCCTCAATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAA 3579 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||||||||||| |||| ||| || ||||| Sbjct 3578 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 3547 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/158 (72%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTG 116517 |||||| ||| |||||||||| || ||||| |||| ||| || | | | |||||| Sbjct 2719 CTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATT--TGATGGTG 2662 Query 116518 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTC 116577 |||| |||| || || ||| |||| || || |||||||||||||| |||||||| Sbjct 2661 CCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTG 2602 Query 116578 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATAC 116615 || || || || || || | || || || | ||| || Sbjct 2601 CCGGTTTCGGTCTGCGATTCGATGATGGCGTACCACAC 2564 >seq158314 Length=2971 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | ||| || || || |||||| |||||| ||||| || || | ||||| Sbjct 1945 CCTCGTCTCTGCTGATTAGCTCGTTGGAGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 1886 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || | || || |||||||||||||| |||||||| ||||| | Sbjct 1885 TCAGCCAGAAGATGGAGGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGG 1826 Query 127659 CAAATAGACGCTC 127671 | | | |||||| Sbjct 1825 CCACCACACGCTC 1813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612230736919680