Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq71244 356 3e-93 seq17163 190 3e-43 seq85981 183 4e-41 >seq71244 Length=7141 Score = 356 bits (394), Expect = 3e-93 Identities = 1044/1594 (65%), Gaps = 32/1594 (2%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 || || ||| |||| || || || || || || |||||| | || || || ||||| Sbjct 2980 TCGTCCTCAGCTTTGTATTTGTCGGCGTCCTGCACCATCCTCTCGATATCCTCTTTGCTC 3039 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | || |||||||| || || || || ||||||| ||| || | | ||| | | || Sbjct 3040 AGTCGGCCCTTATCGTTGGTGATGGTGATCTTTTTCTCTTTGCCGGTG--CTTTTGTCCA 3097 Query 6689 GCACTTACA--TTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 | | ||| |||||||| || || ||||| || ||||| | || | ||| || || Sbjct 3098 CCGCGGACACGTTCAAAATGCCGTTGGCATCCACGTCGAAGGTGACCTCAATCTGCGGG- 3156 Query 6747 TACCCCTCG--GTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATC 6804 |||||||| | |||| || || ||||| | ||||| | || || | |||| || Sbjct 3157 -ACCCCTCGCGGAGCGGGCGGGATTCCCGTCAGCTCAAACTTGCCCAGCAGGTTGTTGTC 3215 Query 6805 CGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTG 6864 | | | | | ||||| ||||| ||||| | || ||| | || || || || Sbjct 3216 CTTGGTCATGGCCCGTTCCCCTTCGTAGACCTGGATGAGGACCCCGGGCTGGTTGTCAGA 3275 Query 6865 TGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGG 6924 || | ||| | || || |||| || || || || || | | ||| | | Sbjct 3276 GTAGGTGGTGAACACCTGGGTTTGTTTAGTGGGGATGGTGGTGTTACGCTTAATCAGAGA 3335 Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984 ||||| | || || || |||| || || |||||||||| |||||||| || | Sbjct 3336 CGTCATGACCCCTCCAGCGGTCTCGATACCCAGGGACAGAGGTGCCACGTCCAGCAGCAG 3395 Query 6985 CAGGTCTTGAACAGATTCGTTCCCT------TCACCCGTTAAGATGGCGGCTTGGACCGT 7038 || ||| ||||| ||| || || || || | |||||||| ||||| | Sbjct 3396 CACGTCCTGAAC------GTTGCCCGAGGTATCGCCTGTGAGAATGGCGGCCTGGACGGC 3449 Query 7039 CGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098 || ||||| || |||||||| || ||||| || | || ||||| || | ||||| || Sbjct 3450 GGCGCCGTAAGCCACCGCCTCGTCTGGGTTGATGCTCTTGTTCAGCTCCCTGCCGTTGAA 3509 Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158 ||| | | | || || ||||| ||||| || || || || ||||||| ||||| Sbjct 3510 GAGATCGGCCAGGAGTTTCTGGATTTTAGGGATGCGGGTGGAGCCTCCGACCAGGACGAT 3569 Query 7159 TTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT 7218 |||| | ||| || || || || | ||| | | | ||| || || || || | Sbjct 3570 GTCATGGATCTTCCCCTTGTCCATTTTGGCGTCCCTCATGGCTTTCTCCACCGGCTCTAA 3629 Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278 | | ||||| ||| ||||| |||||||| || || | ||| ||||| || || Sbjct 3630 GGTTCCCCTGAACAGGTCGGAGCACAGCTCCTCAAAGCGAGCCCTGGTGATGGAGGTGTA 3689 Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338 ||| || ||| || | | ||||| || || ||| | | || | | || || | Sbjct 3690 GAAGTCGGTGCCCTCAAACAGAGAATCGATCTCGATGCTGGCCTGGGAGCTGGAGGACAG 3749 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || | ||| || | |||||| || || || | | | | || | | ||| | Sbjct 3750 GGTCCTCTTGGCCCTCTCACAAGCTGTGCGCAGCCTCCTCAATGCTCTCTTGTTCTGGCT 3809 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 || || ||||| ||||| | || ||||| || ||||| | | | | || Sbjct 3810 GATGTCCTTCTTGTGTTTCCTCTTGAACTCCTCCATAAAGTGGCTGACCATGCGGTTGTC 3869 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 || ||||| ||||||| ||| || || || || || ||||| || ||||||||||| | Sbjct 3870 AAAGTCTTCTCCACCCAGGTGAGTGTCTCCAGCCGTGGCTTTCACCTCAAAGATACCGTC 3929 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 ||||||| | | | || ||||| || || || || |||| |||||| || || ||||| Sbjct 3930 TTCAATGGTCAGGATGGACACATCGAAGGTTCCTCCGCCCAAGTCAAAGATCAGGACGTT 3989 Query 7579 -CGTA-TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| || | ||||| |||| || |||||||||||||| || |||||||| || || Sbjct 3990 ACGTTCTCCT-GTCTTGCTTCTG-TCCAGACCGTACGCGATGGCGGCCGCCGTCGGCTCG 4047 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCG 7695 || || || | || || ||| || || || | ||| || ||||| ||||| ||||| Sbjct 4048 TTGATGATCCTCAGGACGTGCAGTCCTGCGAT-GACGCCTGCGTCTTTAGTCGCCTGTCG 4106 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || ||||| ||||| || ||||| || | ||| || | | || || | || || Sbjct 4107 CTGGGAGTCGTTGAAGTACGCTGGGACTGTGATGACAGCTTTGGACACCTTTTGGCCCAG 4166 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 || | ||| || || || ||||| || || ||||| || |||||||| |||| Sbjct 4167 GTAGGCTTCAGCAATCTCCTTCATCTTTACCAGGACCATGGAGGAAATCTCCTCAGGGTT 4226 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 || |||| || || || || |||| ||| |||| || | | | || Sbjct 4227 GAAGGCTTTCTCCTCCCCTTTGTGCTCCACTTGAATTTTGGGCTTCCCTCCGTCTCC--- 4283 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| ||||| | | ||||| |||||||| | || ||| | || || |||||| Sbjct 4284 GATCACCTTGAAGGGCCAATGCTTCATATCCGCCTGCACCACTGCATCATCAATCTTTCT 4343 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 ||| || || | ||| |||||||| || ||||| ||||||||| || ||||| || Sbjct 4344 TCCAATCAGTCTCTTGGCATCAAACACGGTGTTGCTGGGGTTCAAAGCCACCTGGTTTTT 4403 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 || ||||||||||| || | || | | || || ||||| ||||| ||||| || Sbjct 4404 GGCTGCGTCCCCGATGAGCC--TC-TCTGTGTCAGTGAACGCCACGTAGCTGGGGGTGGT 4460 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 | || || |||||||| || || |||||||| ||| || | || ||||| || Sbjct 4461 CCTGTTGCCCTGGTCGTTGGCGATGATTTCTACTTTTCCGTGCTGGAAAACCCCGACACA 4520 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGATTGCT 8149 || || || || || | ||||| ||||| ||| Sbjct 4521 GGAGTAGGTGGTGCCCAGGTCAATGCCGATCGCT 4554 >seq17163 Length=10605 Score = 190 bits (210), Expect = 3e-43 Identities = 369/542 (68%), Gaps = 6/542 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| |||||||| | || || || || || ||||| ||| Sbjct 3638 GCACCATAGGCCACTGCTTCATCAGGGTTAATGCTCTTGTTGAGCTCCTTCCCGTTGAAA 3579 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || | || || || || || || || || || || |||| ||||| Sbjct 3578 AAGTCCTGCAGCAGCTTCTGGATCTTGGGAATACGAGTGGAACCTCCAACCAGGACGATG 3519 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | | || || ||||| | ||| || || | ||||| ||||| |||| Sbjct 3518 TCGTGGATCTGAGCCTTGTCCATCTTGGCGTCACGGAGAGCCTTTTCCACAGGCTCCAGG 3459 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 | ||||||| |||| ||| || || || || || | |||||| || || ||| Sbjct 3458 GTTCCTCGGAACAGGTCCGCGTTCAGCTCTTCGAATCGGGCCCTGGTAATTGAGGTGTAG 3399 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||| || || ||||| | ||||| ||||||||| | | ||| | | || || | Sbjct 3398 AAATCGACTCCTTCGTACAGAGAATCGATTTCAATGCTGGCTTGGGTGCTGGATGACAGG 3339 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| | |||||||||||| || | ||||| | || | | ||| || Sbjct 3338 GTGCGCTTTGCCCTCTCACACGCCGTGCGCAGGCGACGCACTGCCCTCTTGTTGTCGCTG 3279 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAA 7456 || |||||||| | || || || ||||| | ||||| || || | | | | Sbjct 3278 ATTTCTTTCTTGTACTTGCGCTTGAACTCGCCGATGAAGTGGTTGACCATGCGGTT---G 3222 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||| || |||||||| || || || || || | ||||| || ||||| || Sbjct 3221 TCGAAGTCTTCTCCTCCCAAGTGGGTGTCGCCTGCTGTGGACTTGACCTCGAAGATGCCG 3162 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | || | || || |||||||| || || ||||||||||| ||||| ||| Sbjct 3161 TCTTCAATAGTCAAGATGGAGACGTCAAACGTGCCGCCGCCCAGGTCAAAGATGAGGACG 3102 Query 7577 TT 7578 || Sbjct 3101 TT 3100 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACA 7653 || ||||| || |||||||||||||| || || || || || || || ||||||| |||| Sbjct 2283 TTTTTATCCAGGCCGTACGCGATAGCAGCAGCAGTCGGCTCGTTGATGATACGAAGGACA 2224 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || || |||| ||| || | |||||||| || || || || || || || || ||||| Sbjct 2223 -TTAAGCCCAGAAATGGTGCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTA 2165 Query 7714 GGCCGGGACCGTTACGACCGC 7734 ||| || || |||||||| || Sbjct 2164 GGCAGGCACAGTTACGACTGC 2144 >seq85981 Length=6088 Score = 183 bits (202), Expect = 4e-41 Identities = 368/543 (68%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || || || | || ||||| || || || || || Sbjct 1971 GCTCCATAAGCCACAGCTTCATCTGGATTGATGCTCTTGTTCAGCTCCTTTCCATTGAAG 2030 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || | || || || ||||| || || || ||||||||||| || || Sbjct 2031 AAATCCTGGAGCAGCTTCTGGATCTTGGGGATACGGGTTGAGCCACCGACCAACACAATG 2090 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | | |||||| ||||| | || || |||| || || || || || | Sbjct 2091 TCATGAATCTGCCCTTTATCCATCTTGGCATCACGGAGTGACTTCTCCACGGGGTCTAAG 2150 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||| | ||| || ||||||||||| || | ||| || || |||||| Sbjct 2151 GTGCCACGGAAGAGGTCAGCGTTGAGCTCCTCAAAACGAGCCCTGGTGATTGAGGTATAG 2210 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||| ||||| ||||| | || |||||||||||| | | || | | ||||| | Sbjct 2211 AAATCTACGCCCTCGTACAGAGAGTCAATTTCAATGCTAGCCTGGGTGCTGGAAGACAGG 2270 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| | ||||| || || || | |||||| | || | ||| || | Sbjct 2271 GTGCGCTTTGCTCTTTCACAAGCGGTGCGCAGACGACGGACAGCTCTTTTGTTGTCGCTA 2330 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAA 7456 || || ||||| | || || || ||||| | ||||| || || | | | | Sbjct 2331 ATGTCCTTCTTGTACTTGCGCTTGAACTCAGCGATGAAGTGGTTGACCATGCGATT---G 2387 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||||||||| ||||| | ||||| || || || || | ||||| ||||||||||| Sbjct 2388 TCGAAATCTTCCCCACCAAGATGTGTGTCTCCAGCAGTGGACTTGACCTCAAAGATACCA 2447 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | || | || ||||| || || |||||||| || ||||| ||||| || Sbjct 2448 TCCTCGATGGTCAAGATGGACACATCGAAGGTGCCACCACCAAGATCAAAGATGAGGACA 2507 Query 7577 TTC 7579 ||| Sbjct 2508 TTC 2510 Score = 86.0 bits (94), Expect = 8e-12 Identities = 138/195 (71%), Gaps = 5/195 (3%) Strand=Plus/Plus Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 ||||||||||||| ||||||||||||| |||||||| || || || ||||| || | Sbjct 3926 CAAAAACTGTGTTGGTGGGGTTCATGGCAACCTGGTTCTTGGCTGCATCTCCGATCAGCC 3985 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCCTTGGTCGTTC 8074 || | || || || || || || | |||| || || | || ||||||||||| Sbjct 3986 TCTCCGAA---TCTGTGAAGGCCACATA-GCTGGGTGTGGTCCTGTTTCCTTGGTCGTTG 4041 Query 8075 GCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAA 8134 ||||| ||||| || | | | ||| | || || || || ||||| || || || | | Sbjct 4042 GCAATGATTTCAACTTTGCCATGTTGGAACACACCAACACAGGAATAGGTGGTCCCGAGA 4101 Query 8135 TCAATACCGATTGCT 8149 || ||||| | |||| Sbjct 4102 TCGATACCAACTGCT 4116 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || || || || || || ||||| || || || ||||||||||| || ||||| ||| Sbjct 2967 TTTTTGTCCAGCCCATAGGCGATGGCAGCAGCTGTTGGTTCATTGATGATACGCAGAACA 3026 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || ||||||| || || | |||||||| || || || || || || || || |||||| Sbjct 3027 TTGAGGCCAGAGATTGTGCCAGCATCTTTAGTGGCCTGGCGCTGGGAGTCATTGAAGTAG 3086 Query 7715 GCCGGGACCGT 7725 || || ||||| Sbjct 3087 GCAGGTACCGT 3097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633811342696320