Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq51664 208 9e-49 seq120612 102 1e-16 seq142310 82.4 9e-11 >seq51664 Length=13532 Score = 208 bits (230), Expect = 9e-49 Identities = 651/990 (66%), Gaps = 25/990 (3%) Strand=Plus/Plus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || ||| | | || || |||| ||||| |||||| Sbjct 10781 CTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGAC 10840 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| ||||||||| | |||| || | |||||||| | ||||||| ||| | Sbjct 10841 GATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGAT 10900 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 10901 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAG 10960 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTC--GTAGTTG 106078 ||||| | | || | ||| ||||| || | | |||||| | |||| Sbjct 10961 GCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGTT- 11019 Query 106079 AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCA-CCCCTTG-GGACGTGGGAGAAC 106136 | | || ||| | |||||||| || | || || | |||||| ||| |||||| | Sbjct 11020 CGGTGGGCTTCTTC-TCCCACATGTCGTACTGCAGGATGCCCTTGCTGAC--GGGAGAGC 11076 Query 106137 CCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 106196 | | | ||||| |||| || | | | |||| || |||||||||||||||| | Sbjct 11077 CTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 11136 Query 106197 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 106256 |||| || ||| || ||||| || ||||| | || || || || || || | Sbjct 11137 CGTGGTAGATGACCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTCGCTTTCGAACG 11196 Query 106257 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 106316 ||| || | || || ||||||| | |||||| || || | ||||| || |||| Sbjct 11197 GGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGT 11256 Query 106317 GTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGT 106376 | ||| | || |||||| ||| || ||||| | || | || |||| || Sbjct 11257 GGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTTGT 11316 Query 106377 TTAGATTTTTGGTAACAAT--CTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGC 106433 | | ||| ||| || || ||||| ||| ||||||| | | |||||||| | Sbjct 11317 TCAAATTCTTG---ACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAAGTCC 11373 Query 106434 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 106493 | ||| |||| ||| | || || ||||| |||| ||| || || || || Sbjct 11374 G---CTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCT 11430 Query 106494 CATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCA 106553 |||| | |||||||| | |||||||| |||| |||| ||| || || |||| Sbjct 11431 CATCGTGGCTGGTGTACTCGATGATTTCTGTGCACAGGTTGCTGGACTTGATGGTGCCCA 11490 Query 106554 AATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 106613 ||||| |||||| ||||| ||||||| || || ||||| |||||||| ||||| || | Sbjct 11491 GATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAG 11550 Query 106614 TCTCCGTCTGTGACTTGAGAATTGCCTTCCAC-ACATCGGCGGCTGGTACAATGGCGTTG 106672 | || ||||| |||| || || || | |||| || | | | || || | | ||| Sbjct 11551 TTTCTGTCTGGGACTCGATAACGGCGTGCCACAACTGCTGAGCCT-TCACCACGCGCTTG 11609 Query 106673 GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTC 106731 | |||| | ||| || |||||||| ||| |||||||| ||| | || || Sbjct 11610 AACTTCCCCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTC-CCCCCAGCACTC 11668 Query 106732 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCT--CCTCAACC 106789 | | ||||| || || ||||| | |||||||| | || | | ||| || Sbjct 11669 GTCCAACCCTGGGCACTCGTTGGGACACATCAGAGACCA--GTCCTCGTTGCTCTCCACT 11726 Query 106790 CGCTTCATGAAAAGGTCTGGAATCCACAGG 106819 | ||||||||| ||||| || ||||||||| Sbjct 11727 CTCTTCATGAACAGGTCGGGGATCCACAGG 11756 >seq120612 Length=9325 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| ||| ||||||||||| || || || |||| ||| || || || || Sbjct 2719 CTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCC 2660 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||||| ||||| ||||| ||||||| || ||||||||||||||||| ||||| || Sbjct 2659 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCC 2600 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACAC 106647 || || ||||| || | || || || | |||||| Sbjct 2599 GGTTTCGGTCTGCGATTCGATGATGGCGTACCACAC 2564 >seq142310 Length=1461 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| ||| ||| || || || ||| || ||||| ||||| || || | ||||| Sbjct 818 CCTCATCCCGGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCT 877 Query 117353 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 117412 | | |||| | || || |||||| |||||||||||||| |||||||| ||| || | Sbjct 878 TGAGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCCGCGAAAG 937 Query 117413 CAAAAAGGCGCTC 117425 | | || ||||| Sbjct 938 CCACAATTCGCTC 950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588753285947520