Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq85981 113 4e-19 seq17163 109 4e-18 seq71244 86.0 5e-11 >seq85981 Length=6088 Score = 113 bits (124), Expect = 4e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||||| || ||||| || || || |||||||| || || || || |||||||||| Sbjct 3108 ATGCTGTAATTACGGTACCTGCCTACTTCAATGACTCCCAGCGCCAGGCCACTAAAGATG 3049 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| || |||||||| ||||| ||||||||||| || |||||||| Sbjct 3048 CTGGCACAATCTCTGGCCTCAATGTTCTGCGTATCATCAATGAACCAACAGCTGCTGCCA 2989 Query 550518 TTGCATATGGACTTGATAAA 550537 | || ||||| || || ||| Sbjct 2988 TCGCCTATGGGCTGGACAAA 2969 >seq17163 Length=10605 Score = 109 bits (120), Expect = 4e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| ||||||| || || || || |||||||| || || || || || ||||||| Sbjct 2142 ATGCAGTCGTAACTGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATG 2201 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| |||| |||||||| |||||||| ||||| || || ||||||||||| Sbjct 2202 CAGGCACCATTTCTGGGCTTAATGTCCTTCGTATCATCAACGAGCCGACTGCTGCTGCTA 2261 Query 550518 TTGCATATGGACTTGATAAA 550537 | || || || || |||||| Sbjct 2262 TCGCGTACGGCCTGGATAAA 2281 >seq71244 Length=7141 Score = 86.0 bits (94), Expect = 5e-11 Identities = 181/270 (67%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 549983 AACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAA 550042 |||| ||||| || || || || | || ||||| || ||||| || |||| || Sbjct 4562 AACAGTGTAGCGATCGGCATTGACCTGGGCACCACCTACTCCTGTGTCGGGGTTTTCCAG 4503 Query 550043 AATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTT 550102 | || ||||| ||||| || ||||| || || || ||||| || || || || || Sbjct 4502 CACGGAAAAGTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTG 4443 Query 550103 TCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAAT 550162 | ||||| || || || | | || || ||||| ||| | || | || || Sbjct 4442 GCGTTCACTGACACAGAGAGGCTCATCGGGGACGCAGCCAAAAACCAGGTGGCTTTGAAC 4383 Query 550163 CCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACT 550222 || | ||| || | |||||||| || | | |||||||||| || ||||| | Sbjct 4382 CCCAGCAACACCGTGTTTGATGCCAAGAGACTGATTGGAAGAAAGATTGATGATGCAGTG 4323 Query 550223 GTTCAGGCAGATATGAAGCATTGGCCTTTC 550252 || ||||| ||||||||||||||||| ||| Sbjct 4322 GTGCAGGCGGATATGAAGCATTGGCCCTTC 4293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4020493479079520