Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq137484 170 2e-37 seq29309 122 7e-23 >seq137484 Length=8150 Score = 170 bits (188), Expect = 2e-37 Identities = 142/174 (82%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || | ||||||||||| || || || Sbjct 3807 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGAAGTGCATAGCTGGCGATATTGAAAGGC 3866 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 |||||||| ||||| || || || | |||||||||||||||||| ||||| ||||||| | Sbjct 3867 ACCCCGAGACCCATATCACCAGAGCGCTGGTAGAGCTGACACGACAGCTCGCCGTCGCAC 3926 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 ||||| || ||||||| ||||||||| || || |||||||||||| || |||| Sbjct 3927 ACGTAGAATTGACACAGGGTGTGGCAGGGTGGCAGAGCCATGAGGGGCAGGTCT 3980 Score = 136 bits (150), Expect = 3e-27 Identities = 136/175 (78%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||| |||||||| || || || |||||||||||||| || ||||| ||||||||||| Sbjct 5629 CATGTTTGTGTACTCGGCCCCAAAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTC 5688 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || || || | | ||||||| ||||||| |||| | ||| || |||||||| Sbjct 5689 GCCTTCCTCTCGATCTGTGAAGCCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTC 5748 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30323 ||| ||||| ||||| ||| | |||||||| |||| |||||| || |||| |||| Sbjct 5749 CCAAATCTTCACCCCTTTCGCTGAGAGCTCCTTGGCGTTTGTTGATCCCTGTGAC 5803 >seq29309 Length=5917 Score = 122 bits (134), Expect = 7e-23 Identities = 88/102 (86%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 112108 TCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 112167 |||||||||||||| | ||| ||||||| |||||||||| ||||| || |||||||| Sbjct 1050 TCCCTGCTGAGGACAATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCTGGGATGGAA 1109 Query 112168 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||| || ||||| ||||| ||||||||||||||||||||| Sbjct 1110 AACCATGTTTTTCTGCCCATGATCACCACGTTCTGCTTGCCT 1151 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 112275 CCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACACGGCCACGATACCGTT 112334 ||| ||||| | ||| || ||||||||||||| ||| |||||||| ||||||||| |||| Sbjct 5271 CCAGGGCAGGTTTCCATTATTCCCGATGCCCAGGTCCGGACACACCGCCACGATAGCGTT 5330 Query 112335 CAGAATGAGGG 112345 ||||||| ||| Sbjct 5331 CAGAATGCGGG 5341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407788684465904