Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq51664 239 8e-58 seq158314 114 2e-20 seq142310 91.5 3e-13 seq120612 87.8 3e-12 >seq51664 Length=13532 Score = 239 bits (264), Expect = 8e-58 Identities = 631/946 (67%), Gaps = 27/946 (3%) Strand=Plus/Plus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||||| |||||||| || ||||| || | | |||| |||| ||||| ||||| || || Sbjct 11408 GGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCGATGATTTCTGTGCACAG 11467 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 ||||||| |||||||||| ||||| | | || || ||| | ||| ||||| || Sbjct 11468 GTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTT 11527 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||| | || |||||| || ||| | | | | || || ||| | | Sbjct 11528 GTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACTCGATAACGGCGTGCCACAACTG 11587 Query 221893 TCTG-GCGCTCACCGTCCTCTTGA-CTGCACCCTCGGTCTTTTCATACCCGGTATAGAGC 221950 ||| || ||||| | ||||| || | |||| ||| ||||| ||| |||||| Sbjct 11588 -CTGAGCCTTCACCACGCGCTTGAACTTC-CCCTG---CTTCTCATAGGAGGTGTAGAGC 11642 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 | || |||| || || | |||||||| ||||| ||| | ||||||||||||| Sbjct 11643 TTTTCGAACTCCTCCCCCCAGCACTCGTCCAACCCTGGGCACTCGTTGGGACACATCAGA 11702 Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 ||||| || |||| | || |||| |||||| ||||| ||||||||||| | | Sbjct 11703 GACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTAG 11762 Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130 || || || |||| | |||||||||| ||| |||| ||| | || |||| || ||| Sbjct 11763 AAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCA 11822 Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190 || | ||| |||||||| |||||||| || | ||| | || || |||| ||||||||| Sbjct 11823 AACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCTCCTGGTCTCTTGTTGCCG 11882 Query 222191 CCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG 222250 ||||| || || | || |||| | | | || | || || | |||||| Sbjct 11883 CCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGATCCCGTTG 11942 Query 222251 GATCGACCGTTGGTGCCCTTAATGTACGCACCGCCG--GCCCT----CAGGTTACTGGCA 222304 || ||||||||||| ||||| || || ||| | || ||| ||| | || Sbjct 11943 GAGTTGCCGTTGGTGCCGGCGATGTA-GCTCC-CCGTTGTTCTGATGCAGCTTA-TCGC- 11998 Query 222305 GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364 || || || || ||||| ||| |||| || |||||| ||| || ||||| Sbjct 11999 --CACACCAATTCCCCCGGCTGATTTGGAGACCAGGGCGCATTGCTTCAGCGTGTCGTAA 12056 Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTG 222424 ||||| || || ||| || || | | ||||| || || |||| ||| | || Sbjct 12057 ATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTG 12116 Query 222425 GTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGA 222484 ||| | ||||| || |||||||| |||||| || || | | |||| ||| Sbjct 12117 TTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGG 12176 Query 222485 TCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATG 222544 | ||||||||| | | || | |||||| | ||| ||| | ||| ||||||| Sbjct 12177 TTGTACGTCTCAATGGCTGCGTCGATGTCCATCTTGTGGATCCCGACGGCCACTCTCATG 12236 Query 222545 TACATGTACTGGGGCCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTT 222601 ||||| ||| || | || |||| || || || || | |||||| || Sbjct 12237 AGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTT-GATCT--TCAACAGGTAGGACCGC 12293 Query 222602 TCCAGAGTCTTGAACCCAAAGTAGTTG-AGGTCAAAGTCTCTGCCG 222646 |||||||||||||| || ||| ||||| ||| ||| |||||| || Sbjct 12294 TCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAA-TCTCTGTCG 12338 Score = 100 bits (110), Expect = 5e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || || ||||| ||| | |||| || || ||| || | Sbjct 10784 CATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGAT 10843 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 || || ||||| ||||| ||||| | ||| | ||| ||| | | ||||||| Sbjct 10844 CTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGA 10903 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| ||| |||||||| || |||| |||||| || Sbjct 10904 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCT 10963 Query 221245 GTT 221247 ||| Sbjct 10964 GTT 10966 >seq158314 Length=2971 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| ||||| ||||| |||||||| ||||| ||| ||||| || || Sbjct 1810 GGAGAGCGTGTGGTGGCCTTCGCTGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCC 1869 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||||||||| ||| ||| || |||||||| ||| ||| ||||||||||| Sbjct 1870 TCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGTCTGACCTTCTCCAACGAGCTA 1929 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 1930 ATCAGCAGAGACGAGG 1945 >seq142310 Length=1461 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| | || || || || || |||||||||||||| ||| ||| || || || Sbjct 953 GGGGAGCGAATTGTGGCTTTCGCGGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCT 894 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCA-TGCCCGGGCTGTACTTTTCCAACGAGCT 25991 |||||||| ||||||||| ||| | |||| | |||| || || || ||||||||||| Sbjct 893 GCCATCTTTTGGCTCAAGAAGA-GAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCT 835 Query 25992 CATCAGCAGGGACGAGG 26008 || ||| |||| |||| Sbjct 834 GATTAGCCGGGATGAGG 818 >seq120612 Length=9325 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 ||| || ||||| |||||||||| || ||| || ||||||| || ||||||||| Sbjct 2180 CATAAACAGGTCTGGGATCCACATGGCGAAAAACAGGTCTCTGGCCCTCTGCTCCTCTTT 2121 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 ||| |||| ||| ||| ||||| || ||||| | || |||||||||||||| || Sbjct 2120 ACCGGTGTTCTTCTTCAACTCCAAGAAGTCAAACACATCGAAATGCCACGGCTCCAGGTA 2061 Query 222160 GACGGCCAGAGCGCCGGGTCGCT 222182 || || | || ||||||| || Sbjct 2060 CACAGCGAAGGCCCCGGGTCTCT 2038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926912245509120