Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq85981 98.7 6e-15 seq86445 91.5 1e-12 >seq85981 Length=6088 Score = 98.7 bits (108), Expect = 6e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| |||||||| || || || || || ||||| || || || || || |||||||||| Sbjct 3108 ATGCTGTAATTACGGTACCTGCCTACTTCAATGACTCCCAGCGCCAGGCCACTAAAGATG 3049 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||| | || || |||||| | ||||| || |||||||||||||| || || Sbjct 3048 CTGGCACAATCTCTGGCCTCAATGTTCTGCGTATCATCAATGAACCAACAGCTGCTGCCA 2989 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 | || ||||| || || || || Sbjct 2988 TCGCCTATGGGCTGGACAAAAA 2967 >seq86445 Length=17332 Score = 91.5 bits (100), Expect = 1e-12 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| ||||| || || ||||| |||||||| Sbjct 13046 GGTATTCCACCTGCTCCCAGAGGTGTCCCTCAGATTGAGGTGACCTTTGACATTGATGCC 13105 Query 476150 AATGGTATTCTTAATGTTACTGC 476172 ||||| ||||| ||||| |||| Sbjct 13106 AATGGCATTCTCAATGTGTCTGC 13128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3261039437674304