Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq51664 203 4e-47 seq120612 111 2e-19 seq142310 82.4 9e-11 >seq51664 Length=13532 Score = 203 bits (224), Expect = 4e-47 Identities = 650/990 (66%), Gaps = 25/990 (3%) Strand=Plus/Minus Query 75703 CCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG--AGGGTGGTCAATGGTCTCTT 75760 ||||||||| || ||||| ||||||||| | || ||| | | || | |||||||| Sbjct 11756 CCTGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGCAACGAGGAC--TGGTCTCTG 11699 Query 75761 TTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGAGTTTGAAGCCCT 75819 | ||||| || || ||||| | ||| || | ||| |||||||| ||| || Sbjct 11698 ATGTGTCCCAACGAGTGCCCAGGGTTGGACGAGTGCTGGGGG-GAGGAGTTCGAAAAGCT 11640 Query 75820 CTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTT-T 75878 |||||| ||||| || |||| | ||| ||| || || | | | ||| | Sbjct 11639 CTACACCTCCTATGAGAAGCAGGGGAAGTTCAA-GCGCGTGGTGAAGGCTCAGCAGTTGT 11581 Query 75879 GGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATG 75938 || | || || || | || ||||| || ||||| || ||||| ||||| ||||| || | Sbjct 11580 GGCACGCCGTTATCGAGTCCCAGACAGAAACTGGCACGCCATACATGCTGTACAAAGACG 11521 Query 75939 CTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCA 75998 | || |||| |||||| |||||| ||||| |||| || |||||| | || || |||| Sbjct 11520 CCTGCAACAGGAAGAGCAACCAACAGAATCTGGGCACCATCAAGTCCAGCAACCTGTGCA 11461 Query 75999 CGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCG 76058 | ||||| | |||||||| | |||||| || || || ||| |||| ||||| | Sbjct 11460 CAGAAATCATCGAGTACACCAGCCACGATGAGGTAGCGGTGTGTAATCTGGCCTCAATTG 11401 Query 76059 CCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTT-CATGAA 76117 | || | ||| |||| ||| || |||||||| | | ||||||| ||| Sbjct 11400 CGCTCAACATGTACGTCACCCCGGAG---CGGACTTTTGACTTTAAAAAACTGGCATCTG 11344 Query 76118 ATCACAAAG--ATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCG 76175 ||||| || || ||| ||| | ||| |||| || | || | ||||| | Sbjct 11343 TGACCAAAGTAATCGT---CAAGAATTTGAACAAGATCATCGAAATTAACTACTATCCAG 11287 Query 76176 TTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTC 76235 | ||| |||||| || | ||| ||||| || ||||| | || || |||||| Sbjct 11286 TGCCCGAAGCGGAAAAGTCCAACAAGCGCCACAGGCCGATTGGAATTGGCGTCCAAGGTT 11227 Query 76236 TCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGA 76295 | ||||||| || || | || ||| | || || || || || || | ||| Sbjct 11226 TGGCGGATGCCTTCATCCTCATGCGTTACCCGTTCGAAAGCGAAGAGGCTCAGCTGCTGA 11167 Query 76296 ATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTG 76355 || || ||||| || ||| || ||||| ||||||||||||| || || |||| | Sbjct 11166 ATATTCAAATCTTCGAGGTCATCTACCACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCG 11107 Query 76356 AAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCC-CAAGGGG-TGCTTCA 76413 | | || |||| ||||| | | || ||||||| || |||||| | || || Sbjct 11106 CCGAGCTCGGCCCCTACGAGACGTACGCAGGCTCTCCCG--TCAGCAAGGGCATCCTGCA 11049 Query 76414 GTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTAC--GACTGGGATGTTCTCAAGGAA 76471 || || |||||||| | ||| || | | |||| | |||||| | | || ||||| Sbjct 11048 GTACGACATGTGGGA-GAAGAAGCCCACCG-AACTGCTGGACTGGAAGCTGCTGAAGGAG 10991 Query 76472 CGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCC 76531 ||| | || | | ||||| || || |||| || ||||| || |||||| Sbjct 10990 AAGATCGCCATCCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCC 10931 Query 76532 ACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTG 76591 ||||| || ||| |||| || || || | | | ||| | ||||| | ||||||||| Sbjct 10930 ACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCCTACACCAGCAACATCTACACC 10871 Query 76592 AGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAG 76651 | || |||| | || |||||| || |||||| || || |||| ||||| | | Sbjct 10870 CGCAGGGTCCTCTCCGGAGAGTTTCAGATCGTCAACCCTCATCTGCTCAAAGACCTGACG 10811 Query 76652 AAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 ||| || || ||| | |||| |||||| Sbjct 10810 GAGAGAGGGCTGTGGAGCGAGGAGATGAAG 10781 >seq120612 Length=9325 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 75875 GTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAG 75934 || ||| | || || || |||| ||||| || || || || ||||| ||||| |||||| Sbjct 2564 GTGTGGTACGCCATCATCGAATCGCAGACCGAAACCGGCACGCCATACATGCTCTACAAG 2623 Query 75935 GATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTT 75994 || || || |||| |||||| ||||| ||||| |||| || ||||| | ||||| Sbjct 2624 GACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTG 2683 Query 75995 TGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 |||||||| || ||||||||||| ||| |||||| Sbjct 2684 TGCACGGAGATCGTAGAGTACACAAGTAAAGATGAG 2719 >seq142310 Length=1461 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 ||||| || | || || ||| |||||||| |||||||||||||| |||||| || Sbjct 950 GAGCGAATTGTGGCTTTCGCGGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCC 891 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 || | |||| | |||||| | || || ||||| ||||| || ||| || || || ||| Sbjct 890 ATCTTTTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGATT 831 Query 65197 TCCCGAGATGAGG 65209 ||| ||||||| Sbjct 830 AGCCGGGATGAGG 818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595328377290240