Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq64860 140 4e-27 seq51664 125 9e-23 seq120612 104 3e-16 seq80567 102 1e-15 seq135112 86.0 8e-11 >seq64860 Length=5635 Score = 140 bits (154), Expect = 4e-27 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||| ||||| ||||||||||| | | | || Sbjct 1160 GCTTGGCCAGCTCACCGGGCAGCAACAGGCGGACGGCCGTCTGGATCTCCCTGGAGGTGA 1219 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| ||||||||| |||||| | ||||||| || | | Sbjct 1220 TGGTGGAACGCTTGTTGTAGTGAGCCAGACGGGAGGCCTCACCGGCGATGCGCTCAAAGA 1279 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| | || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 1280 TGTCGCTCACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 1339 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| | ||| ||||| Sbjct 1340 GCACCTGCTTCATCACTTTGTA 1361 >seq51664 Length=13532 Score = 125 bits (138), Expect = 9e-23 Identities = 335/505 (66%), Gaps = 39/505 (8%) Strand=Plus/Plus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||||||||| || ||||||| ||| | || | |||||||| |||| ||||| Sbjct 11882 GCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGATCCCGTT 11941 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGC----GCACCTTGTGCGCGG 1630177 ||| | |||||||||||| || | |||| || | | | ||| ||| | ||| Sbjct 11942 GGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTTGTTCTGATGCAGCTTAT-CGCCA 12000 Query 1630178 CAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGA 1630237 || || || || ||||| || ||||||| || ||||| || || ||||||||||| | Sbjct 12001 CA---CCAATTCCCCCGGCTGATTTGGAGACCAGGGCGCATTGCTTCAGCGTGTCGTAAA 12057 Query 1630238 TGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA---CGACGAGTTTTG--CGG 1630292 |||| ||||| |||| | |||||| | | || ||||| ||| || | || | | Sbjct 12058 TGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGAC-AGCTGTGGCCTG 12116 Query 1630293 GTGCGCCGTGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACAT 1630352 || || || ||||||||||||||||| | || ||||||| ||| | |||| Sbjct 12117 TTG----GTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACA- 12171 Query 1630353 GGCGTCGTAGGTGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTG 1630412 | |||| | ||| | | | || |||| | ||| | | ||| Sbjct 12172 ------GCAGGT----TGTACG-TCTCAATGGCTGCGTCGATGTC------CATCTTGTG 12214 Query 1630413 G---CCGATGGCGACGCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCAC 1630469 | |||| ||| || | ||||||||||| ||| || |||||| | || |||| | Sbjct 12215 GATCCCGACGGCCACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGAT 12274 Query 1630470 CTTGGTCAGGTAGGACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCG 1630529 ||| |||||||||||| || ||| ||| ||| ||| || ||| ||||| | Sbjct 12275 CTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCT 12334 Query 1630530 GTCGTGGCGGATGGCGGCGTCGAGG 1630554 |||| |||||| | || |||| Sbjct 12335 GTCGAAAATGATGGCCGAGTTGAGG 12359 Score = 102 bits (112), Expect = 1e-15 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354 ||||||| || | | || ||||| |||| ||| || ||||||| | ||| || | Sbjct 10795 TCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTC 10854 Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGC 1627414 | ||||| || | ||| |||||||||||| ||||| | | ||| | |||| |||||| Sbjct 10855 CGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGC 10914 Query 1627415 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGC 1627474 |||||||||| | || | |||||||||||| | |||| || || ||| | || || Sbjct 10915 CCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGC 10974 Query 1627475 CGTG 1627478 |||| Sbjct 10975 CGTG 10978 >seq120612 Length=9325 Score = 104 bits (114), Expect = 3e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 |||||||| |||||||| ||| || | | || ||||| |||||||||||| | || Sbjct 2697 ACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTC 2638 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| ||||||||||| ||||||||| |||| |||||| ||| |||||| ||| | Sbjct 2637 CTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATTCGATG 2578 Query 1628287 ATGGCCGACCAGATCTG 1628303 ||||| |||| | ||| Sbjct 2577 ATGGCGTACCACACCTG 2561 >seq80567 Length=9442 Score = 102 bits (112), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||||||||| ||||||||||| |||| ||||| || ||| |||||| Sbjct 7228 CGTCATCTCCTTTGACGGTTCCTACGTCAACTACCGTCACTTGGCTCTGCTGTGCGACAC 7287 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 |||| ||||||||| || ||||| ||||||| |||||| ||||||| Sbjct 7288 CATGACCTGCCGCGGTCACCTGATGGCCATCACGCGTCACGGCATCAACCG 7338 >seq135112 Length=4376 Score = 86.0 bits (94), Expect = 8e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||| | |||||||| |||| | ||| | |||||| | ||||||||| Sbjct 1479 GCCGCCAACTATTTGGACATCAAAGGTCTGTTAGATGTCACCTGCAAGACGGTGGCCAAC 1420 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 ||||| || ||||| | || ||||||||| | ||||| || |||||||| Sbjct 1419 ATGATTAAAGGCAAAACCCCGGAGGAGATCAGGAAGACGTTCAACATCAA 1370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6093479697644016