Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq51664 190 2e-43 seq48423 86.0 6e-12 >seq51664 Length=13532 Score = 190 bits (210), Expect = 2e-43 Identities = 988/1552 (64%), Gaps = 57/1552 (4%) Strand=Plus/Plus Query 138479 TCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAA 138538 ||| ||| || | ||||| ||| | || |||||| || |||| | || | || Sbjct 10813 TCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGG 10872 Query 138539 CGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGG 138598 ||| |||||| ||||| | | || | || |||||||| ||||| ||||| || |||| Sbjct 10873 TGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 10932 Query 138599 TCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTT 138658 || || ||||| |||| || || |||| | ||||| | ||| | Sbjct 10933 AGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCT 10992 Query 138659 CCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTA 138718 |||| ||| | ||||||| || ||| | || || || | |||||| |||||||| | Sbjct 10993 CCTTCAGCAGCTTCCAGTCCAGCAGTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCA 11052 Query 138719 ACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCA 138778 || ||| || ||||| |||| |||||| ||||| || | ||| |||| Sbjct 11053 GGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCA 11112 Query 138779 ACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCA 138838 |||| ||||||||| || || | | ||| || ||| || || ||| |||| Sbjct 11113 GCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGACCTCGAAGATTTGAATATTCAGCA 11172 Query 138839 ATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTT 138898 | ||||| |||| ||| |||| || | | |||| || || |||| |||| Sbjct 11173 GCTGAGCCTCTTCGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTT 11232 Query 138899 GCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCG---ATAG 138955 | ||||| | ||| | || | |||||| || ||| ||| | |||||| | | Sbjct 11233 GGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGAC---TTTTCCGCTTCGGGCACTG 11289 Query 138956 GATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTA--TG 139013 |||| ||||| | |||||||| ||||| ||||| |||| || || ||| | || Sbjct 11290 GATAGTAGTTAATTTCGATGATCTTGTTCAAATTCTTGACGATTACTTTGGTCACAGATG 11349 Query 139014 CTTTAATCGTTCAAAATCGTATGTGCCC-CCGTTGTCGTCGACGACGTCGACAAATTTGT 139072 | | | || ||| || | || | | ||| || ||||| ||| ||| Sbjct 11350 CC--AGTTTTTTAAAGTCAAAAGTCCGCTCCGGGGT-------GACGT--ACA----TGT 11394 Query 139073 TGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAA 139132 ||| ||| ||||| | || |||||||| || || ||| || | |||| |||| | Sbjct 11395 TGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCGATGA 11454 Query 139133 TTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGT 139192 |||| | |||| || || ||||||| || || | ||| ||||| ||||| || | || Sbjct 11455 TTTCTGTGCACAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGT 11514 Query 139193 TACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGA 139252 | || || |||||||| ||||| || || ||||||||||| || | ||| |||| | Sbjct 11515 TGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACTCGATAACGG 11574 Query 139253 ATTTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTTCGTC-GC-GCTCGTACTT 139310 | |||| | | ||| | | |||| | | || ||| | || ||| || Sbjct 11575 CGTGCCACAACTGCTGAGCCTTCA--CCACGCGCTTGAACTTCCCCTGCTTCTCATAGGA 11632 Query 139311 TTCGTAGAGTTCGTCGAA-TCGTTCACC--GTAGGCGTCAGAAAGATCGCGACACTTGTC 139367 |||||| | ||||| || | | || | | |||| | | | |||| || Sbjct 11633 GGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTC---CAACCCTGGGCACTCGTT 11689 Query 139368 AGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAAT 139427 |||||||| || ||||| | |||| || || | | |||||||||| || || || Sbjct 11690 GGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGAT 11749 Query 139428 CCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCAT 139487 ||||| || | | | || | || ||| || ||| || |||| || | Sbjct 11750 CCACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGTTCTTCTTTAG 11809 Query 139488 GTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC--- 139544 | ||||| ||||| ||||| |||||||| || ||||| || ||||| | || || Sbjct 11810 CTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCTCCTGG 11869 Query 139545 TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGG 139604 | || ||||| || || ||||||| ||| | | || ||| | || | || ||| || Sbjct 11870 TCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGG 11929 Query 139605 CTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACT----GTTGCGAGCTCGGA 139660 | | ||| | | | |||||||||| |||| || ||| | || || Sbjct 11930 GACGATCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTT----GTTCTGA 11985 Query 139661 CGTCATGTACATTG--ATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCG 139718 | || | || | | || ||||| ||| | ||||||| | | ||| || || Sbjct 11986 TG-CA-GCTTATCGCCACACCAATTCCCCCGGCTGATTTGGAGACCAGGGCGC-ATTGCT 12042 Query 139719 T-AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACG 139777 | | || ||||| || ||| ||||||||||| | ||| | || ||| ||||| | Sbjct 12043 TCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGG 12102 Query 139778 AAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATT 139836 | || || || || || || || || || || || ||||| ||||| || | Sbjct 12103 ACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACT 12162 Query 139837 TGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCG 139896 | | | |||| || | |||||| || ||||| | || ||| | |||||| ||| Sbjct 12163 TCTCT-GACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATCTTGTGGATCCCG 12221 Query 139897 ACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttC 139956 || | |||| ||| ||||| || || || |||||||| ||| | ||| || | Sbjct 12222 ACGGCCACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAAC 12281 Query 139957 AGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || || |||| ||| || |||||| |||| ||| | | ||| |||||| Sbjct 12282 AGGTAGGACCG--CTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATC 12331 >seq48423 Length=831 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || ||| Sbjct 137 ATGCAGATCTTCGTGAAGACCCTGACCGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 78 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||||||||| || || ||||| || ||||| || || Sbjct 77 GACACCATTGAAAATGTTAAAGCAAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCAG 18 Query 24824 CAACGTTTGATCTTTGC 24840 || ||| |||||||||| Sbjct 17 CAGCGTCTGATCTTTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448961543053440