Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq64860 188 1e-41 seq160435 127 3e-23 seq51664 107 3e-17 seq105069 96.9 5e-14 seq120612 93.3 7e-13 seq80567 93.3 7e-13 >seq64860 Length=5635 Score = 188 bits (208), Expect = 1e-41 Identities = 188/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||||||||| || ||||||||| ||||||| || ||| ||| Sbjct 1121 TGTACTTGGTCACGGCCTTGGTACCCTCAGACACGGCGTGCTTGGCCAGCTCACCGGGCA 1180 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| ||||| ||||||||||| | || | ||| ||| |||||||| | Sbjct 1181 GCAACAGGCGGACGGCCGTCTGGATCTCCCTGGAGGTGATGGTGGAACGCTTGTTGTAGT 1240 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| |||||| | ||||||| || | |||||| | || || ||||||| Sbjct 1241 GAGCCAGACGGGAGGCCTCACCGGCGATGCGCTCAAAGATGTCGCTCACGAAGGAGTTCA 1300 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| | ||| |||| Sbjct 1301 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTCATCACTTTGT 1360 Query 1485710 AAAC 1485713 | || Sbjct 1361 ACAC 1364 >seq160435 Length=2430 Score = 127 bits (140), Expect = 3e-23 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 1493 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 1434 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT 1485584 | |||||| ||||||||||||||||| | || | ||| ||| ||||||||| Sbjct 1433 GCAGCAGGCGGACGGCGGTCTGGATCTCTCTGGAGGTGATGGTGGAGCGCTTGTT 1379 >seq51664 Length=13532 Score = 107 bits (118), Expect = 3e-17 Identities = 184/265 (69%), Gaps = 8/265 (3%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| || || ||||||| ||| | || | |||||||| || | ||||| Sbjct 11882 GCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGATCCCGTT 11941 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGC----GCACCTTGTGCGCGG 2073652 ||| | |||||||||||| || | |||| |||| | | ||| ||| | || Sbjct 11942 GGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTTGTTCTGATGCAGCTTAT---CGC 11998 Query 2073653 CAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGA 2073712 || | || || || ||||| | ||||||| || ||||| | |||||||| ||||| | Sbjct 11999 CACA-CCAATTCCCCCGGCTGATTTGGAGACCAGGGCGCATTGCTTCAGCGTGTCGTAAA 12057 Query 2073713 TGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCG 2073772 |||| ||||| |||| | |||||| | | ||| ||||| || || || | Sbjct 12058 TGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGT 12117 Query 2073773 CCGTGCCGGCATTGAAGAGCGTggg 2073797 || || || |||||||||||||| Sbjct 12118 TGGTTCCTGCGTTGAAGAGCGTGGG 12142 Score = 100 bits (110), Expect = 4e-15 Identities = 284/440 (65%), Gaps = 2/440 (0%) Strand=Plus/Plus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| || || || |||||||||||| ||| | |||||||||| ||||| ||||||| Sbjct 11446 ACTCGATGATTTCTGTGCACAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGC 11505 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | || |||| |||||| |||| ||||||||| |||| || || || |||| | | Sbjct 11506 TCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACT 11565 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCC-TNNNNN 2071752 || | ||| ||| | || | || |||| | | || | | ||| | Sbjct 11566 CGATAACGGCGTGCCACAACTGCTGAGCCTTCACC-ACGCGCTTGAACTTCCCCTGCTTC 11624 Query 2071753 NNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCC 2071812 |||| || || | | || |||||||| || || || | Sbjct 11625 TCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAACCCTGGGCAC 11684 Query 2071813 TCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCG 2071872 ||| || || | || |||||||| || || |||| | ||| ||||||||| Sbjct 11685 TCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCG 11744 Query 2071873 CACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTT 2071932 ||||||||||||| || || || | || | | ||||||||| ||| |||||| Sbjct 11745 GGGATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGTTCTTC 11804 Query 2071933 TTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCG 2071992 || || || || |||| | | |||||||||||| ||||||||||| ||| ||||| Sbjct 11805 TTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCT 11864 Query 2071993 CCCTTGCGCTTGCCGCCGCC 2072012 || | |||| |||||| Sbjct 11865 CCTGGTCTCTTGTTGCCGCC 11884 Score = 96.9 bits (106), Expect = 5e-14 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 2069564 TCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 2069623 ||||||| || | | || ||| | | || ||| || ||||||| | ||| || | Sbjct 10795 TCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTC 10854 Query 2069624 CCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCGGTGTTGC 2069683 | ||||| || | ||| |||||||||||||| ||| | | ||| | |||| |||||| Sbjct 10855 CGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGC 10914 Query 2069684 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCAGGC 2069743 |||||||||| | || | |||||||||||| | |||| ||||| ||| | || || Sbjct 10915 CCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGC 10974 Query 2069744 CGT 2069746 ||| Sbjct 10975 CGT 10977 >seq105069 Length=573 Score = 96.9 bits (106), Expect = 5e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| || |||||||||||||| |||||||||| ||| || ||| Sbjct 23 ACCTCCTCTGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 82 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || |||||| |||||||| ||||||||||| Sbjct 83 TACTGGATGGGGAAGATGACGAAGCGACGAGGGTTCTCCTTCAGCAGCGGCTC 135 >seq120612 Length=9325 Score = 93.3 bits (102), Expect = 7e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 |||| ||| |||||||| ||| || | |||||||||| |||||||||||||| || Sbjct 2697 ACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTC 2638 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 |||| ||||||||||| |||||||| |||| || || ||| |||||| || | Sbjct 2637 CTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATTCGATG 2578 Query 2071699 ATGGCCGACCA 2071709 ||||| |||| Sbjct 2577 ATGGCGTACCA 2567 >seq80567 Length=9442 Score = 93.3 bits (102), Expect = 7e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 434126 CGTGATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 434185 ||| |||||||||||||| ||||||||||| |||| ||||| || ||| |||||| Sbjct 7228 CGTCATCTCCTTTGACGGTTCCTACGTCAACTACCGTCACTTGGCTCTGCTGTGCGACAC 7287 Query 434186 CATGTGCTGTCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCG 434236 |||| ||| ||||| || ||||| ||||||| |||||| ||||||| Sbjct 7288 CATGACCTGCCGCGGTCACCTGATGGCCATCACGCGTCACGGCATCAACCG 7338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7898540567070672