Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq115624 120 2e-22 >seq115624 Length=278 Score = 120 bits (132), Expect = 2e-22 Identities = 163/230 (71%), Gaps = 12/230 (5%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| | || ||||||||| | |||| || ||||| ||||| ||||| || Sbjct 49 CCTCCCCTCAGACGCAAGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAG 108 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGG--------- 34861 ||| |||| | || ||||| |||||||| || |||||||| || ||||| Sbjct 109 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGNNNNNNNNNN 168 Query 34862 ---TCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCA 34918 ||| | || | ||||| ||||| | ||||| |||||| | | || || ||| Sbjct 169 NNATCTGGAGGGATGCCCTCTTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGAATCA 228 Query 34919 TTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAA 34968 ||| ||| || || | ||| ||||||||||| || |||||||| || || Sbjct 229 CTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAA 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325032104471312