Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq85981 107 1e-17 seq17163 95.1 9e-14 seq39745 87.8 1e-11 >seq85981 Length=6088 Score = 107 bits (118), Expect = 1e-17 Identities = 118/156 (76%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 |||||| ||||| || || ||||| || | |||||||| ||||||||||| || || Sbjct 2958 TTGTCTACCTTTTTGTCCAGCCCATAGGCGATGGCAGCAGCTGTTGGTTCATTGATGATA 3017 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | || |||||| || |||| ||| | || |||||||||||||| || | || || || Sbjct 3018 CGCAGAACATTGAGGCCAGAGATTGTGCCAGCATCTTTAGTGGCCTGGCGCTGGGAGTCA 3077 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478 || || || ||||| || ||||| || |||| |||| Sbjct 3078 TTGAAGTAGGCAGGTACCGTAATTACAGCAT-TGTT 3112 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| || ||||| || || | ||| | || | |||||||||||||| ||||| Sbjct 3926 CAAAAACTGTGTTGGTGGGGTTCATGGCAACCTGGTTCTTGGCTGCATCTCCGATCAGCC 3985 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 || | ||||| || | ||||| || || || | || ||||| || || |||| Sbjct 3986 TCTCCGAATCTGTGAAGGCCACATAGCTGGGTGTGGTCCTGTTTCCTTGGTCGTTGGCAA 4045 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||||||||| |||| ||| | ||||| ||||| | | || || || | ||| | Sbjct 4046 TGATTTCAACTTTGCCATGTTGGAACACACCAACACAGGAATAGGTGGTCCCGAGATCGA 4105 Query 282870 TACCAA 282875 |||||| Sbjct 4106 TACCAA 4111 >seq17163 Length=10605 Score = 95.1 bits (104), Expect = 9e-14 Identities = 110/147 (75%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| || || ||||| | |||||||||||| || || || || || | | ||| Sbjct 2283 TTTTTATCCAGGCCGTACGCGATAGCAGCAGCAGTCGGCTCGTTGATGATACGAAGGACA 2224 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||| ||| | ||||||||||| ||||| || | || || || || || || Sbjct 2223 TTAAGCCCAGAAATGGTGCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 2164 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 ||||| ||||| | || |||| |||| Sbjct 2163 GCAGGCACAGTTACGACTGCAT-TGTT 2138 >seq39745 Length=8068 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || ||||| || ||||||| |||||| |||||||| || |||| ||||| ||||||||| Sbjct 6957 GGCTCATTGATGATTCTCATAACATTCAGACCAGCGATGGTTCCAGCATCCTTAGTGGCT 7016 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTAC 282480 || | || | ||| || || || ||||| ||||| | || |||| ||| || Sbjct 7017 TGGCGCTGGGCATCATTGAAGTAGGCAGGGACAGTGACCACAGCATGTGTGAC 7069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3732458506609248