Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20]
166,448 sequences; 681,652,711 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq51664 275 6e-69
seq120612 120 3e-22
seq48423 109 5e-19
seq13309 93.3 4e-14
seq47767 84.2 2e-11
>seq51664
Length=13532
Score = 275 bits (304), Expect = 6e-69
Identities = 994/1534 (65%), Gaps = 52/1534 (3%)
Strand=Plus/Plus
Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296
||||||| | || ||||| | || || | ||||||||| |||| ||| || | ||
Sbjct 10813 TCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGG 10872
Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356
|| | |||||| || | | ||| | |||||||||||||||| ||||| ||||| |
Sbjct 10873 TGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 10932
Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC 148416
||||||||||| || | |||||| ||| | || ||| | | || ||
Sbjct 10933 AGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCT 10992
Query 148417 GCTTCAGAGCCGCCCAGTCC--CAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTG 148474
|||||| | ||||||| ||| ||| | || || | |||||||||||||||
Sbjct 10993 CCTTCAGCAGCTTCCAGTCCAGCAGTTCGGTG--GGCTTCTTCTCCCACATGTCGTACTG 11050
Query 148475 CAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGC 148534
||| ||||| ||| |||| ||| |||||| ||| || ||| || | || ||
Sbjct 11051 CAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGC 11110
Query 148535 CAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594
||| |||||||||||||| || ||| ||| ||| || |||| ||||| | || ||
Sbjct 11111 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGACCTCGAAGATTTGAATATTCAG 11170
Query 148595 CAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCC 148654
|||| ||| ||||||||| |||| ||||| | | || || || || | ||
Sbjct 11171 CAGCTGAGCCTCTTCGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACC 11230
Query 148655 CTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-- 148712
|| ||||| | ||||| |||| ||| ||||||| ||| ||| ||
Sbjct 11231 TTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCT---TCGGGCAC 11287
Query 148713 -GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGT-AATTC 148770
||||||| ||| ||||||||||||| | ||| || | || || || |
Sbjct 11288 TGGATAGTAGTTAATTTCGATGATCTTGTTCAAATTCTTGACGATTACTTTGGTCACAGA 11347
Query 148771 TGCGCAGCAATTCAAAATCGTACTTGTCATCTAC-----GATGCATCGGTTCACGGCGAT 148825
||| ||| || ||| || | ||| || | || | | ||| | || ||
Sbjct 11348 TGC-CAGTTTTTTAAAGTC--AAAAGTCCGCTCCGGGGTGACGTACATGTTGAGCGCAAT 11404
Query 148826 AGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCA 148885
||||| ||||| ||||| || |||||| || | ||||||| | ||| || | |||
Sbjct 11405 TGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCGATGATTTCTGTGCA 11464
Query 148886 CAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTC 148945
||| |||||| | ||||| ||||| |||| ||| |||||||| |||||||| |||||
Sbjct 11465 CAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTC 11524
Query 148946 CTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAG 149005
|||||||||||||| || ||||||||| ||| | || | | | | ||
Sbjct 11525 TTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACTCGATAACGGCGTGCCACAA 11584
Query 149006 GTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCG 149065
| ||| || ||| ||| | | |||| || ||| || | || || |||
Sbjct 11585 CTGCTGAGCCTTCACCACGCGCTTGAACTTCCCCTGCTTCTCATAGGAGGTGTAGAGCTT 11644
Query 149066 CTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGA 149125
|||||| |||| || |||| ||||| | || ||||||| || || ||||| || ||
Sbjct 11645 TTCGAACTCCTCCCCCCAGCACTCGTCCAACCCTGGGCACTCGTTGGGACACATCAGAGA 11704
Query 149126 CCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACAT 149185
||| | ||| | ||| | |||||| ||||| ||||| | ||| || |||| |
Sbjct 11705 CCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTAGAA 11764
Query 149186 GAGGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTG 149243
||||| | || | ||| || || || |||| || | || | |
Sbjct 11765 AAGGTCCCTGGCTCTCTGC--TCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCA 11822
Query 149244 AATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC------CTTGCGCTTG 149297
|| | ||| |||||||| ||||| | ||||| |||| || || |||| |||
Sbjct 11823 AACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCTCCTGGTCTCTTG---TTG 11879
Query 149298 CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCA 149357
|||||||||||||||| || || ||||||| | |||| | ||| || | || ||
Sbjct 11880 CCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGATCCCG 11939
Query 149358 CTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTT-TG-TGCACGT 149415
||| ||||||| || || |||| || || | | || || || |||| |
Sbjct 11940 TTGGAGTTGCCGTTGGT---GC--CGGCGA-TGTAGCTC-CCCGTTGTTCTGATGCAGCT 11992
Query 149416 T-----GACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGA 149470
| || || || || ||| | | || |||| ||||| | |||||
Sbjct 11993 TATCGCCACACCAATTCCCCCGGCTGATTTGGAGACCAGGGCGCATTGCTTCAGCGTGTC 12052
Query 149471 GTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGG 149530
||| ||||| |||||||||||| ||||||| ||||| ||||| | ||| || ||
Sbjct 12053 GTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGG 12112
Query 149531 AAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCAT 149590
|| || || ||| | |||||| |||||| || || | |||| ||
Sbjct 12113 CCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAG 12172
Query 149591 CATCTCGTACGACTCGAGCACGCGGTCCATGT-CATCGCCATGGATGCCTATGGCGACGC 149649
|| | ||||| ||| | | ||| |||| |||| ||||| || | ||| || |
Sbjct 12173 CAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATC-TTGTGGATCCCGACGGCCACTC 12231
Query 149650 GCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAG--CC 149707
||| ||||| |||||||||||||| ||||||||| || || | || |||| ||
Sbjct 12232 TCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACC 12291
Query 149708 GTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAG 149741
| || || |||||| |||| ||| | ||||||
Sbjct 12292 G--CTCCAGAGTCTTGAAGCCGAAGAAGTTGTAG 12323
>seq120612
Length=9325
Score = 120 bits (132), Expect = 3e-22
Identities = 101/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923
|||||||||||||||| | ||||||||||||| ||||||| ||||| |||| || |
Sbjct 2705 TGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 2646
Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983
||||||| |||||||| ||||||||||| |||||||| || ||| ||||| |||||
Sbjct 2645 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCG 2586
Query 148984 TTTC 148987
|||
Sbjct 2585 ATTC 2582
>seq48423
Length=831
Score = 109 bits (120), Expect = 5e-19
Identities = 105/132 (80%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGC-TG 133588
|| || ||||||||||| ||||||||||||||||| || |||| ||||||| | | |
Sbjct 7 ATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATC-TTTGCTTTAACATT 65
Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648
|||| ||||| |||||||||| || | ||||| ||| || |||||||| || || ||
Sbjct 66 TTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCAC 125
Query 133649 GAAAATCTGCAT 133660
||| ||||||||
Sbjct 126 GAAGATCTGCAT 137
>seq13309
Length=2637
Score = 93.3 bits (102), Expect = 4e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 133533 AGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCA 133592
|||| ||||||||| || || |||||||||||||| |||||| ||| | | |||
Sbjct 2637 AGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCA 2578
Query 133593 ACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAA 133652
| || ||| ||||||| || |||| ||||| ||| ||||| || || || || || ||
Sbjct 2577 ATAGTATCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAG 2518
Query 133653 ATCTGCATG 133661
|||||||||
Sbjct 2517 ATCTGCATG 2509
>seq47767
Length=302
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 133542 TGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCG 133601
||||| ||||||||||||||||| || |||||| ||||| | |||| | |||
Sbjct 302 TGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTTTCAATTGAGTCA 243
Query 133602 GTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|||||||||| || | ||||| ||| || || ||||| || || || || ||||||||
Sbjct 242 CTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482414994683520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |