Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq51664 275 6e-69 seq120612 120 3e-22 seq48423 109 5e-19 seq13309 93.3 4e-14 seq47767 84.2 2e-11 >seq51664 Length=13532 Score = 275 bits (304), Expect = 6e-69 Identities = 994/1534 (65%), Gaps = 52/1534 (3%) Strand=Plus/Plus Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 ||||||| | || ||||| | || || | ||||||||| |||| ||| || | || Sbjct 10813 TCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGG 10872 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | |||||| || | | ||| | |||||||||||||||| ||||| ||||| | Sbjct 10873 TGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 10932 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC 148416 ||||||||||| || | |||||| ||| | || ||| | | || || Sbjct 10933 AGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCT 10992 Query 148417 GCTTCAGAGCCGCCCAGTCC--CAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTG 148474 |||||| | ||||||| ||| ||| | || || | ||||||||||||||| Sbjct 10993 CCTTCAGCAGCTTCCAGTCCAGCAGTTCGGTG--GGCTTCTTCTCCCACATGTCGTACTG 11050 Query 148475 CAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGC 148534 ||| ||||| ||| |||| ||| |||||| ||| || ||| || | || || Sbjct 11051 CAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGC 11110 Query 148535 CAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594 ||| |||||||||||||| || ||| ||| ||| || |||| ||||| | || || Sbjct 11111 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGACCTCGAAGATTTGAATATTCAG 11170 Query 148595 CAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCC 148654 |||| ||| ||||||||| |||| ||||| | | || || || || | || Sbjct 11171 CAGCTGAGCCTCTTCGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACC 11230 Query 148655 CTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-- 148712 || ||||| | ||||| |||| ||| ||||||| ||| ||| || Sbjct 11231 TTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCT---TCGGGCAC 11287 Query 148713 -GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGT-AATTC 148770 ||||||| ||| ||||||||||||| | ||| || | || || || | Sbjct 11288 TGGATAGTAGTTAATTTCGATGATCTTGTTCAAATTCTTGACGATTACTTTGGTCACAGA 11347 Query 148771 TGCGCAGCAATTCAAAATCGTACTTGTCATCTAC-----GATGCATCGGTTCACGGCGAT 148825 ||| ||| || ||| || | ||| || | || | | ||| | || || Sbjct 11348 TGC-CAGTTTTTTAAAGTC--AAAAGTCCGCTCCGGGGTGACGTACATGTTGAGCGCAAT 11404 Query 148826 AGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCA 148885 ||||| ||||| ||||| || |||||| || | ||||||| | ||| || | ||| Sbjct 11405 TGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCGATGATTTCTGTGCA 11464 Query 148886 CAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTC 148945 ||| |||||| | ||||| ||||| |||| ||| |||||||| |||||||| ||||| Sbjct 11465 CAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTC 11524 Query 148946 CTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAG 149005 |||||||||||||| || ||||||||| ||| | || | | | | || Sbjct 11525 TTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACTCGATAACGGCGTGCCACAA 11584 Query 149006 GTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCG 149065 | ||| || ||| ||| | | |||| || ||| || | || || ||| Sbjct 11585 CTGCTGAGCCTTCACCACGCGCTTGAACTTCCCCTGCTTCTCATAGGAGGTGTAGAGCTT 11644 Query 149066 CTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGA 149125 |||||| |||| || |||| ||||| | || ||||||| || || ||||| || || Sbjct 11645 TTCGAACTCCTCCCCCCAGCACTCGTCCAACCCTGGGCACTCGTTGGGACACATCAGAGA 11704 Query 149126 CCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACAT 149185 ||| | ||| | ||| | |||||| ||||| ||||| | ||| || |||| | Sbjct 11705 CCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTAGAA 11764 Query 149186 GAGGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTG 149243 ||||| | || | ||| || || || |||| || | || | | Sbjct 11765 AAGGTCCCTGGCTCTCTGC--TCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCA 11822 Query 149244 AATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC------CTTGCGCTTG 149297 || | ||| |||||||| ||||| | ||||| |||| || || |||| ||| Sbjct 11823 AACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCTCCTGGTCTCTTG---TTG 11879 Query 149298 CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCA 149357 |||||||||||||||| || || ||||||| | |||| | ||| || | || || Sbjct 11880 CCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGATCCCG 11939 Query 149358 CTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTT-TG-TGCACGT 149415 ||| ||||||| || || |||| || || | | || || || |||| | Sbjct 11940 TTGGAGTTGCCGTTGGT---GC--CGGCGA-TGTAGCTC-CCCGTTGTTCTGATGCAGCT 11992 Query 149416 T-----GACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGA 149470 | || || || || ||| | | || |||| ||||| | ||||| Sbjct 11993 TATCGCCACACCAATTCCCCCGGCTGATTTGGAGACCAGGGCGCATTGCTTCAGCGTGTC 12052 Query 149471 GTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGG 149530 ||| ||||| |||||||||||| ||||||| ||||| ||||| | ||| || || Sbjct 12053 GTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGG 12112 Query 149531 AAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCAT 149590 || || || ||| | |||||| |||||| || || | |||| || Sbjct 12113 CCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAG 12172 Query 149591 CATCTCGTACGACTCGAGCACGCGGTCCATGT-CATCGCCATGGATGCCTATGGCGACGC 149649 || | ||||| ||| | | ||| |||| |||| ||||| || | ||| || | Sbjct 12173 CAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATC-TTGTGGATCCCGACGGCCACTC 12231 Query 149650 GCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAG--CC 149707 ||| ||||| |||||||||||||| ||||||||| || || | || |||| || Sbjct 12232 TCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACC 12291 Query 149708 GTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAG 149741 | || || |||||| |||| ||| | |||||| Sbjct 12292 G--CTCCAGAGTCTTGAAGCCGAAGAAGTTGTAG 12323 >seq120612 Length=9325 Score = 120 bits (132), Expect = 3e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||||||||| | ||||||||||||| ||||||| ||||| |||| || | Sbjct 2705 TGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 2646 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||||||| |||||||| ||||||||||| |||||||| || ||| ||||| ||||| Sbjct 2645 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCG 2586 Query 148984 TTTC 148987 ||| Sbjct 2585 ATTC 2582 >seq48423 Length=831 Score = 109 bits (120), Expect = 5e-19 Identities = 105/132 (80%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGC-TG 133588 || || ||||||||||| ||||||||||||||||| || |||| ||||||| | | | Sbjct 7 ATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATC-TTTGCTTTAACATT 65 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 |||| ||||| |||||||||| || | ||||| ||| || |||||||| || || || Sbjct 66 TTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCAC 125 Query 133649 GAAAATCTGCAT 133660 ||| |||||||| Sbjct 126 GAAGATCTGCAT 137 >seq13309 Length=2637 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 133533 AGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCA 133592 |||| ||||||||| || || |||||||||||||| |||||| ||| | | ||| Sbjct 2637 AGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCA 2578 Query 133593 ACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAA 133652 | || ||| ||||||| || |||| ||||| ||| ||||| || || || || || || Sbjct 2577 ATAGTATCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAG 2518 Query 133653 ATCTGCATG 133661 ||||||||| Sbjct 2517 ATCTGCATG 2509 >seq47767 Length=302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 133542 TGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCG 133601 ||||| ||||||||||||||||| || |||||| ||||| | |||| | ||| Sbjct 302 TGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTTTCAATTGAGTCA 243 Query 133602 GTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||||| || | ||||| ||| || || ||||| || || || || |||||||| Sbjct 242 CTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482414994683520