Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq51664 154 1e-32 >seq51664 Length=13532 Score = 154 bits (170), Expect = 1e-32 Identities = 944/1497 (63%), Gaps = 52/1497 (3%) Strand=Plus/Plus Query 146938 TTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTA 146997 ||||| ||| | | || | ||||| || ||||| | || ||||| |||| || || Sbjct 10881 TTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTG 10940 Query 146998 GGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGG--ATGTTGTCCTTCA 147055 ||||| |||| || || || | || |||| | | || || || ||||||| Sbjct 10941 GGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGT--GGATGGCGATCTTCTCCTTCA 10998 Query 147056 A-AGTTTGCCAGTCCCACA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCA 147112 || || ||||||| || ||| | |||| || | ||||||||||||||| || | Sbjct 10999 GCAGCTT-CCAGTCCAGCAGTTCG--GTGGGCTTCTTCTCCCACATGTCGTACTGCAGGA 11055 Query 147113 CTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAAT 147171 || ||| ||||| ||| ||| |||| |||| ||| || | ||| ||| Sbjct 11056 TGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGA-GCTCGGCGGCCAGC 11114 Query 147172 TCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACG 147231 || ||||| ||||| || || | | ||| ||| ||| |||||| | || || | Sbjct 11115 TCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGACCTCGAAGATTTGAATATTCAGCAGC 11174 Query 147232 GTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGG 147291 || |||||||| ||| | || ||||| || | |||||||| |||||||| ||| Sbjct 11175 TGAGCCTCTTCGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGG 11234 Query 147292 ATACCGACGCCGATAGGTCGATGCTTTTCGTTGC-----TGCGCTTCGCGCTCGCTATGG 147346 | || | || || || | || | |||| | ||||||| || | | Sbjct 11235 ACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACT-----G 11289 Query 147347 GATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTT 147406 |||||| ||| || || |||||||| | || || | ||||| || | | | Sbjct 11290 GATAGTAGTTAATTTCGATGATCTTGTTCAAATTCTTGACGATTACTTTGGTCACAGATG 11349 Query 147407 TGAGTTTCTCGAAATCATAAGTCCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATA 147465 ||||| | || ||| |||||| || | |||||| || ||| | || || Sbjct 11350 CCAGTTTTTTAAAGTCAAAAGTCCGCTCCGGGGTGACGTAC--AT--GTTGAGCGCAATT 11405 Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCAC 147525 || |||||||| || || || ||| ||| | | |||||| | |||||| | |||| Sbjct 11406 GAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCGATGATTTCTGTGCAC 11465 Query 147526 AGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCT 147585 ||||||||| | || ||| |||| ||| || || ||||| |||| ||||| |||||| Sbjct 11466 AGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCT 11525 Query 147586 TTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATG---C 147642 ||| | |||||||| || ||| || || || | | |||||| || | Sbjct 11526 TTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACT---CGATAACGGCGTGCCAC 11582 Query 147643 AGGTCCTGCGCTCGCACC-CGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAA 147701 | | ||| || |||| ||| || | |||| || || || ||| | Sbjct 11583 AACTGCTGAGCCTTCACCACGC-GCTTGAACTTCCCCTGCTTCTCATAGGAGGTGTAGAG 11641 Query 147702 CCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAG 147761 | || ||||| || || |||| ||| | | || || |||| | ||||||||||| Sbjct 11642 CTTTTCGAACTCCTCCCCCCAGCACTCGTCCAACCCTGGGCACTCGTTGGGACACATCAG 11701 Query 147762 CGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTA 147821 ||||| |||| | || | ||| ||||| || || | |||||| |||| Sbjct 11702 AGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTA 11761 Query 147822 CATAAGATCGC--GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACG 147879 | ||| || | || || ||| ||||| || |||| || | | || | | Sbjct 11762 GAAAAGGTCCCTGGCTCTCTGC--TCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAG 11819 Query 147880 CTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTT 147936 | | | ||||||||||||||| || | ||| | ||| | || ||| | | || Sbjct 11820 TCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCTCCTGGTCTCTTGTTG 11879 Query 147937 CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCG 147996 |||||||||||||| | || || ||||||| | || | || |||||| | | ||| Sbjct 11880 CCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGATCCCG 11939 Query 147997 CTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTA 148056 | | ||||||||||| ||| | ||| || | || | |||| ||| Sbjct 11940 TTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTTGTTC-----TGATGCAGCTTA 11994 Query 148057 -----ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGT 148111 || ||||| || ||| | | || || | ||||| | || || || Sbjct 11995 TCGCCACACCAATTCCCCCGGCTGATTTGGAGACCAGGGCGCATTGCTTCAGCGTGTCGT 12054 Query 148112 AGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAA 148171 | ||||| ||||||||||||| ||| | | | |||| || || ||| || || Sbjct 12055 AAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCC 12114 Query 148172 TCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCA 148231 | ||||| || ||| || ||||| ||||| || ||| | || | || || Sbjct 12115 TGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCA 12174 Query 148232 TGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCA 148291 | ||||||||||| || | |||||||| ||| || || | || || | || Sbjct 12175 GGTTGTACGTCTCAATGGCTGCGTCGATGTCCATCTTGTGGATCCCGACGGCCACTCTCA 12234 Query 148292 TGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTT 148351 ||||||||||||| ||||| ||||| |||| ||||||||| | || || | Sbjct 12235 TGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCT 12294 Query 148352 CGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 | || || ||| | || ||| | ||||| |||||| ||| || |||||||| Sbjct 12295 CCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCG 12351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475619562737280