Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq138711 95.1 4e-16 seq78450 86.0 2e-13 seq17657 84.2 7e-13 seq89308 78.8 3e-11 seq56905 78.8 3e-11 >seq138711 Length=6002 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||| || |||||||||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 109 GCTAAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTGGATC 50 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 49 CCGGGTTTCGGC 38 >seq78450 Length=1975 Score = 86.0 bits (94), Expect = 2e-13 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 2763 TTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCT 2819 ||||| || ||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 218 TTTATCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCT 274 >seq17657 Length=9023 Score = 84.2 bits (92), Expect = 7e-13 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGG 2821 ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 6445 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGG 6498 >seq89308 Length=2474 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCT 2819 || ||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 51 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCT 1 >seq56905 Length=6738 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCT 2819 || ||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 6403 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCT 6453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15820745406960