Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq64860 140 5e-27 seq51664 123 4e-22 seq160435 104 3e-16 seq120612 104 3e-16 seq80567 87.8 3e-11 seq105069 86.0 9e-11 >seq64860 Length=5635 Score = 140 bits (154), Expect = 5e-27 Identities = 169/229 (74%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||| | ||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 1361 TACAAAGTGATGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 1308 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || | |||||| | || ||||||| | |||||| || Sbjct 1307 GGCATCATGAACTCCTTCGTGAGCGACATCTTTGAGCGCATCGCCGGTGAGGCCTCCCGT 1248 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| ||| ||| | | | ||||||||||| ||||| ||| Sbjct 1247 CTGGCTCACTACAACAAGCGTTCCACCATCACCTCCAGGGAGATCCAGACGGCCGTCCGC 1188 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| || ||||| |||| Sbjct 1187 CTGTTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGTACCA 1139 >seq51664 Length=13532 Score = 123 bits (136), Expect = 4e-22 Identities = 204/294 (69%), Gaps = 8/294 (3%) Strand=Plus/Minus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 |||| || ||| ||||||| || | ||||||||||| || || || || | | Sbjct 12171 TGTCAGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAACGCAGGAACCAACAGGC 12112 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 | ||| || ||||| ||| | | |||||| | ||| ||||| ||||| || | Sbjct 12111 CACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATTTACG 12052 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075 ||||||| ||||| ||||| || ||||||| | ||||| || || ||| | || Sbjct 12051 ACACGCTGAAGCAATGCGCCCTGGTCTCCAAATCAGCCGGGGGAATTGGTGTGGCG---- 11996 Query 260076 ACAAGGTGC----GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 | ||| ||| | | |||| |||| | || |||||||||||| | |||||||| Sbjct 11995 ATAAGCTGCATCAGAACAACGGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGG 11936 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 | || |||||||| | |||| ||| ||||||| || |||||||||||| || Sbjct 11935 ATCGTCCCCATGCTGAGAGTTTACAACAACACGGCACGTTACGTCGACCAGGGC 11882 Score = 95.1 bits (104), Expect = 2e-13 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 |||| |||| | |||||||||||| | || | |||||||||||||||| |||| | Sbjct 10959 TGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCA 10900 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053 |||| | | ||| |||||||||||||| ||| | || ||||| || || ||| | | Sbjct 10899 TCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTTCAGATCG 10840 Query 263054 TCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGA 263098 |||||| || ||| |||| | || || | | || ||||||| Sbjct 10839 TCAACCCTCATCTGCTCAAAGACCTGACGGAGAGAGGGCTGTGGA 10795 >seq160435 Length=2430 Score = 104 bits (114), Expect = 3e-16 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||| | | || |||||||||| ||| ||| | | | ||||||||||||||||| Sbjct 1364 CGGCTGACTCACTACAACAAGCGCTCCACCATCACCTCCAGAGAGATCCAGACCGCCGTC 1423 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 1424 CGCCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1475 >seq120612 Length=9325 Score = 104 bits (114), Expect = 3e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| ||||| ||| | || | ||| ||||||||||| |||||| ||||| Sbjct 2561 CAGGTGTGGTACGCCATCATCGAATCGCAGACCGAAACCGGCACGCCATACATGCTCTAC 2620 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCCAAC 262210 ||||||||| |||| || |||||||||||||| |||||||||| | | ||| Sbjct 2621 AAGGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAAT 2680 Query 262211 CTGTGCACCGAGATCGT 262227 |||||||| |||||||| Sbjct 2681 CTGTGCACGGAGATCGT 2697 Score = 87.8 bits (96), Expect = 3e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 ||||| |||| | ||||||||| || | || | |||||||||||||||| |||| | Sbjct 3554 TGCTCTTGGCCCCCATGCCCACAGCTTCCACCGCACAGATCCTGGGCAACAACGAGTCCA 3613 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTT 263046 | |||| ||| |||||||||||||| ||| | |||||||| || || ||| Sbjct 3614 TTGAGGCTTACACCAGCAACATCTACACCCGCAGGGTGCTCTCTGGGGAGTTT 3666 >seq80567 Length=9442 Score = 87.8 bits (96), Expect = 3e-11 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1813106 CGGTTAAAGCCGTGCCGCGTGACGGCCACCAC-TGAGCCGCGGCAACACATGGTGTCGGT 1813164 ||||| | |||||| ||||||| ||||| || ||| |||||||| |||||||||| Sbjct 7338 CGGTTGATGCCGTGACGCGTGATGGCCATCAGGTGA-CCGCGGCAGGTCATGGTGTCGCA 7280 Query 1813165 GGCCAGCGCAAAGTGGCGGTCGTTGACATAGGTGCCGTCAAAGGAGATCACG 1813216 ||| || ||||| |||| |||||| |||| |||||||||||||| ||| Sbjct 7279 CAGCAGAGCCAAGTGACGGTAGTTGACGTAGGAACCGTCAAAGGAGATGACG 7228 >seq105069 Length=573 Score = 86.0 bits (94), Expect = 9e-11 Identities = 88/114 (77%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||| || ||||| ||||| ||| | |||||||||| ||||| Sbjct 135 GAGCCGCTGCTGAAGGAGAACCCTCGTCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 76 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | |||||| || |||||||||||||| || ||||| || |||||||| Sbjct 75 ATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACTGCAGAGGAGGT 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7161756984468576