Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq51664 163 3e-35 seq120612 98.7 1e-15 seq115624 87.8 2e-12 seq47767 86.0 6e-12 >seq51664 Length=13532 Score = 163 bits (180), Expect = 3e-35 Identities = 898/1426 (63%), Gaps = 24/1426 (2%) Strand=Plus/Minus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| ||||||| ||||||||| || || || ||| || |||||||| || | || Sbjct 12287 CTACCTGTTGAAGATCAACGGCAAAGTGGCCGAGCGACCGCAGCACATGCTCATGAGAGT 12228 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 ||| || || || ||| ||||| ||||| ||| | || |||||| | || |||| Sbjct 12227 GGCCGTCGGGATCCACAAGATGGACATCGACGCAGCCATTGAGACGTACAACCTGCTGTC 12168 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCA 7703 ||| ||| || ||||| || ||||| | || ||| || || ||| ||| || Sbjct 12167 AGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAACGCAGGAACCAACAGGCCACA 12108 Query 7704 ATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC 7763 ||||| || || |||| ||||| || ||||||||||| ||||||||| |||| Sbjct 12107 GCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATTTACGACAC 12048 Query 7764 GCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGA 7823 |||| | |||||| | ||||||| | ||| ||||| ||| || ||| | Sbjct 12047 GCTGAAGCAATGCGCCCTGGTCTCCAAATCAGCCGGGGGAATTGGTGTGGCGATAAGCTG 11988 Query 7824 CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883 | | | | | || ||| ||||| ||||||||| || ||| ||| | | || Sbjct 11987 CATCAGAACAACGGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGATCGTCCC 11928 Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAA 7940 |||| || | || | ||| ||| ||| || | || |||||||| || ||| | Sbjct 11927 CATGCTGAGAGTTTACAACAACACGGCACGTTACGTCGACCAGGGCGGCAACAAGAGACC 11868 Query 7941 AGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCT 8000 ||| ||| ||||| || ||||||| |||||||| ||| | | | | || | || Sbjct 11867 AGGAGCCTTCGCCATGTACCTGGAGCCCTGGCACGCCGACGTGTTTGACTTCCTGGAGCT 11808 Query 8001 GCGTCGCAACATGGGTTGCGAAGA-CAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGG 8059 |||| || || || ||| | ||| | || || |||| ||| ||||| Sbjct 11807 AAAGAAGAACACCGGAAAGGAGGAGCAG-AGAGCCAGGGACCTTTTCTACGGCCTGTGGA 11749 Query 8060 TGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCG 8119 | ||||| ||||| |||| | | || | | ||| | ||||| || ||||| ||| Sbjct 11748 TCCCCGACCTGTTCATGAAGAGAGTGGAGAGCAACGAGGACTGGTCTCTGATGTGTCCCA 11689 Query 8120 ATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAAT 8179 | ||||| || | | | || | || ||| | | |||| | Sbjct 11688 ACGAGTGCCCAGGGTTGGACGAGTGCTGGGGGGAGGAGTTCGAAAAGCTCTACACCTCCT 11629 Query 8180 ACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTA 8239 | || | | || || | ||| ||||| || | | || | |||| ||| Sbjct 11628 ATGAGAAGCAGGGGAAGTTCAAGCGCGTGGTGAAGGCTCAGCAGTTGTGGCACGCCGTTA 11569 Query 8240 TCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCA 8299 |||| | || | ||||| || | ||| |||||||||||||||||||| |||||| | Sbjct 11568 TCGAGTCCCAGACAGAAACTGGCACGCCATACATGCTGTACAAAGACGCCTGCAACAGGA 11509 Query 8300 AAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTAC 8359 | ||||| ||| || |||||||||| | |||||| |||||| | ||||| | Sbjct 11508 AGAGCAACCAACAGAATCTGGGCACCATCAAGTCCAGCAACCTGTGCACAGAAATCATCG 11449 Query 8360 AGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGT 8419 |||||| | | ||| || || || || || ||||| || || | | ||| || Sbjct 11448 AGTACACCAGCCACGATGAGGTAGCGGTGTGTAATCTGGCCTCAATTGCGCTCAACATGT 11389 Query 8420 TCGTTGATCGACGCTCAAAC--ACTTACGACTTTGAACAATTGAAAAACGCCGTG---CA 8474 ||| || | | | |||| |||||| || || || | | ||| | Sbjct 11388 ACGT-----CACCCCGGAGCGGACTTTTGACTTTAAAAAACTGGCA---TCTGTGACCAA 11337 Query 8475 AGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGC 8534 ||| | || ||||| | ||||| || | || | ||||| || ||||| Sbjct 11336 AGTAATCGTCAAGAATTTGAACAAGATCATCGAAATTAACTACTATCCAGTGCCCGAAGC 11277 Query 8535 GCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGC 8594 | || |||| ||||||||| || |||| | ||||| |||||| |||| || || Sbjct 11276 GGAAAAGTCCAACAAGCGCCACAGGCCGATTGGAATTGGCGTCCAAGGTTTGGCGGATGC 11217 Query 8595 GTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAAT 8654 || | | |||| ||| | ||||||| |||| || | |||| || || |||| Sbjct 11216 CTTCATCCTCATGCGTTACCCGTTCGAAAGCGAAGAGGCTCAGCTGCTGAATATTCAAAT 11157 Query 8655 AGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGG 8714 || | || ||| ||| | || || ||||| | || ||| || | || Sbjct 11156 CTTCGAGGTCATCTACCACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCCGAGCTCGG 11097 Query 8715 CACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTG 8774 | | ||||| ||||||| ||| || | |||| || || |||| ||||||||||| Sbjct 11096 CCCCTACGAGACGTACGCAGGCTCTCCCGTCAGCAAGGGCATCCTGCAGTACGACATGTG 11037 Query 8775 GAATGTCACGCCCACCTCTTTG-TGGAATTGGAGCGATTTGAAACGCAAAATTGC--TCA 8831 | | | ||||||| || |||| | | ||| |||| || || || || Sbjct 11036 GGAGAAGAAGCCCACCGAACTGCTGGACTGGAAGC-TGCTGAAGGAGAAGATCGCCATCC 10978 Query 8832 ATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAAT 8891 | ||| || | || ||| || |||| |||||||| ||| | || || || || Sbjct 10977 A--CGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGAT 10920 Query 8892 AATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 |||| |||||||| ||| | || | | ||||| |||| | ||| Sbjct 10919 CCTGGGCAACAACGAGTCCATCGAAGCCTACACCAGCAACATCTAC 10874 >seq120612 Length=9325 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 8232 CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTG 8291 |||||| ||||||| || | ||||||||| | ||| |||||||| ||||| ||||| || Sbjct 2572 CGCCATCATCGAATCGCAGACCGAAACCGGCACGCCATACATGCTCTACAAGGACGCCTG 2631 Query 8292 CAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGA 8351 |||| || ||||| || || |||||||||| | ||||||||||||| | || Sbjct 2632 CAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTGTGCACGGA 2691 Query 8352 AATTGTACAGTACA 8365 || ||| |||||| Sbjct 2692 GATCGTAGAGTACA 2705 >seq115624 Length=278 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/155 (72%), Gaps = 12/155 (8%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || ||||| || ||||| || |||||||| || || |||||||||||| Sbjct 49 CCTCCCCTCAGACGCAAGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAG 108 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTG---------- 134596 | |||| | ||| || ||||| || || ||||| |||| ||||||||| Sbjct 109 AGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGNNNNNNNNNN 168 Query 134597 --ATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || || ||||| ||||| || || ||||| Sbjct 169 NNATCTGGAGGGATGCCCTCTTTGTCCTGGATTTT 203 >seq47767 Length=302 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/145 (72%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||||||| || | ||| || || || ||||| ||||| || |||||||||| Sbjct 184 TTCCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGT--- 128 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || || ||||| || || ||||| |||| ||||||||| || || | Sbjct 127 ---CTNNNNNNNNNTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAG 71 Query 134605 GTATGCCTTCTTTTTCTTGAATTTT 134629 | ||||| ||||| ||||| || || Sbjct 70 GGATGCCCTCTTTGTCTTGGATCTT 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504346868088960