Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq71490 105 5e-18 >seq71490 Length=6241 Score = 105 bits (116), Expect = 5e-18 Identities = 101/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| |||||||| || ||| ||| |||||||||||| |||||| || |||||| Sbjct 2564 CCAGACGACCTCCAGTTCTGCATTCAGTCGGTCCAGCTTCACAAAGTCGTCTTTGTTGGT 2505 Query 77371 AA-CTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAG 77429 | |||||| ||| | ||||| |||||||||| ||||||||||||| ||||| | | Sbjct 2504 GATCTGACC-TCCAGATTTCAGCCGCCAGCCGTTCAGCTTCCAGTTCTTCACCCAGGTGG 2446 Query 77430 TCACACC 77436 ||||||| Sbjct 2445 TCACACC 2439 Score = 104 bits (114), Expect = 2e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 77433 CACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCT 77492 |||| ||||| |||||| ||||||| ||||||| |||||||||||| || |||||||| | Sbjct 2347 CACCGTTGATCGTGAACTTGCTGTCGGTGTAGAGGACCAGCTTCTTTATGTTGTTCTCTT 2288 Query 77493 GAGCTTGTTGCAGTGCTTTGGATGCAGCCTGG 77524 ||||||| ||| |||||| | ||||||||| Sbjct 2287 TGGCTTGTTCCAGCGCTTTGCAGGCAGCCTGG 2256 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 77862 CTTCTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTG 77921 || |||||| |||||||||||||||| ||||| ||||||||||| || ||| || | Sbjct 1190 CTCCTCTGAAGAACGCCCAGGCATCTTTCTCTGACGCAAACTTCTTGAAAGAGGCAGCGG 1131 Query 77922 GGAATTTGTCTACTTGGCTCTTACATTCATCCC 77954 | |||||||| || ||||||||||||||||||| Sbjct 1130 GAAATTTGTCCACCTGGCTCTTACATTCATCCC 1098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396649726720240