Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq51664 203 4e-47 seq120612 102 1e-16 >seq51664 Length=13532 Score = 203 bits (224), Expect = 4e-47 Identities = 650/990 (66%), Gaps = 25/990 (3%) Strand=Plus/Plus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | | ||||| |||| || || |||||| Sbjct 10781 CTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGAC 10840 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || |||||| || | |||| || | ||||||||| | ||||| | ||| | Sbjct 10841 GATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGAT 10900 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 10901 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAG 10960 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTC--GTAGTTG 110851 ||||| | | || | ||| ||||| || | | |||||| | |||| Sbjct 10961 GCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGTT- 11019 Query 110852 AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCA-CCCCTTG-GGACGCGGGAGAAC 110909 | | || ||| | ||||||||||| |||| || | |||||| || ||||||| | Sbjct 11020 CGGTGGGCTTCTTC-TCCCACATGTCGTACTGCAGGATGCCCTTGCTGA--CGGGAGAGC 11076 Query 110910 CCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 110969 | | | || || |||| || | | | |||| || |||||||||||||||| | Sbjct 11077 CTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 11136 Query 110970 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 111029 |||| || ||| || ||||| || ||||| | || || || || || || | Sbjct 11137 CGTGGTAGATGACCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTCGCTTTCGAACG 11196 Query 111030 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 ||| || | || || ||||||| | |||||| || || | ||||| || |||| Sbjct 11197 GGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGT 11256 Query 111090 GTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGT 111149 | ||| | || |||||| ||| || ||||| | || | || |||| || Sbjct 11257 GGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTTGT 11316 Query 111150 TTAGATTTTTGGTAACAAT--CTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGC 111206 | | ||| ||| || || ||||| ||| ||||||| | | |||||||| | Sbjct 11317 TCAAATTCTTG---ACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAAGTCC 11373 Query 111207 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 111266 | ||| |||| ||| | || || ||||| |||| ||| || || || || Sbjct 11374 G---CTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCT 11430 Query 111267 CATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCA 111326 |||| | |||||||| | |||||||| || | |||| ||| || || |||| Sbjct 11431 CATCGTGGCTGGTGTACTCGATGATTTCTGTGCACAGGTTGCTGGACTTGATGGTGCCCA 11490 Query 111327 AATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 111386 ||||| |||||| |||||| ||||||| || || ||||| |||||||| ||||| || | Sbjct 11491 GATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAG 11550 Query 111387 TCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTG 111445 | || ||||| || | || || || | ||| ||| | | | || || | | ||| Sbjct 11551 TTTCTGTCTGGGACTCGATAACGGCGTGCCACAACTGCTGAGCCT-TCACCACGCGCTTG 11609 Query 111446 GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTC 111504 | |||| | ||| || |||||||| ||| |||||||| ||| | || || Sbjct 11610 AACTTCCCCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTC-CCCCCAGCACTC 11668 Query 111505 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCAACC 111562 | | ||||| || || ||||| | |||||||| | || | || ||| || Sbjct 11669 GTCCAACCCTGGGCACTCGTTGGGACACATCAGAGACCA--GTCCTCGTTGCTCTCCACT 11726 Query 111563 CGCTTCATGAAAAGGTCTGGAATCCACAGG 111592 | ||||||||| ||||| || ||||||||| Sbjct 11727 CTCTTCATGAACAGGTCGGGGATCCACAGG 11756 >seq120612 Length=9325 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| ||| ||||||||||| || || || || | ||| || || || || Sbjct 2719 CTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCC 2660 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||||| ||||| |||||| ||||||| || ||||||||||||||||| ||||| || Sbjct 2659 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCC 2600 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAAC 111420 || || ||||| |||| || || || | ||| || Sbjct 2599 GGTTTCGGTCTGCGATTCGATGATGGCGTACCACAC 2564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626725316620800