Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq71244 150 5e-31 seq85981 136 1e-26 seq17163 107 6e-18 seq115624 105 2e-17 seq86445 102 2e-16 seq130219 86.0 2e-11 >seq71244 Length=7141 Score = 150 bits (166), Expect = 5e-31 Identities = 418/636 (66%), Gaps = 5/636 (1%) Strand=Plus/Minus Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 |||||||| || || || || || || ||||| || || || ||||| || || || Sbjct 4493 GTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTGGCGTTCACT 4434 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || ||| | | || || || | || ||||| || | ||| || || | || Sbjct 4433 GACACAGAGAGGCTCATCGGGGACGCAGCCAAAAACCAGGTGGCTTTGAACCCCAGCAAC 4374 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || || |||||||| ||| |||| ||||| |||| || ||| | || | Sbjct 4373 ACCGTGTTTGATGCCAAGAGACTGATTGGAAGAAAGATTGATGATGCAGTGGTGCAGGCG 4314 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 ||| | || |||| || || | || | || | ||||| | || || | ||| | Sbjct 4313 GATATGAAGCATTGGCCCTTCAAGGT-GATCGGA--GACGGAGGGAAGCCCAAAATTCAA 4257 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 || || | ||||| || | ||| || || || || ||||| || ||||| | Sbjct 4256 GTGGAGCACAAAGGGGAGGAGAAAGCCTTCAACCCTGAGGAGATTTCCTCCATGGTCCTG 4197 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || || |||||||| ||||||||||| || | || ||| || | | ||||| || Sbjct 4196 GTAAAGATGAAGGAGATTGCTGAAGCCTACCTGGGCCAAAAGGTGTCCAAAGCTGTCATC 4137 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 || || ||||| || || || || ||||||| || || ||||| || ||| ||| Sbjct 4136 ACAGTCCCAGCGTACTTCAACGACTCCCAGCGACAGGCGACTAAAGACGCAGGCGTCATC 4077 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | | || || || || || || || || || || || || || || || || Sbjct 4076 GCAGGACTGCACGTCCTGAGGATCATCAACGAGCCGACGGCGGCCGCCATCGCGTACGGT 4017 Query 349739 CTTGATAAAATGAGTGACCA-AGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || | || | ||| |||| || | || || ||||| || || || || || Sbjct 4016 CTGGACAGAAGCAA-GACAGGAGAACGTAACGTCCTGATCTTTGACTTGGGCGGAGGAAC 3958 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 || ||||| || | || || ||||||| || || ||||| || ||||| || ||||| Sbjct 3957 CTTCGATGTGTCCATCCTGACCATTGAAGACGGTATCTTTGAGGTGAAAGCCACGGCTGG 3898 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCG 349893 || || || || ||||||||||| ||||| || || Sbjct 3897 AGACACTCACCTGGGTGGAGAAGACTTTGACAACCG 3862 >seq85981 Length=6088 Score = 136 bits (150), Expect = 1e-26 Identities = 364/550 (66%), Gaps = 6/550 (1%) Strand=Plus/Minus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| ||| | || || |||||| | |||||||| || || ||||| || | | || Sbjct 2515 GAAAGGAATGTCCTCATCTTTGATCTTGGTGGTGGCACCTTCGATGTGTCCATCTTGACC 2456 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 | || || || || ||||| || || | |||||||| || |||||||||||||| ||| Sbjct 2455 ATCGAGGATGGTATCTTTGAGGTCAAGTCCACTGCTGGAGACACACATCTTGGTGGGGAA 2396 Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAAT 349938 ||||| || ||||| | || || || | || || ||||| |||| || | Sbjct 2395 GATTTCGACAATCGCATGGTCAACCACTTCATCGCTGAGTTCAAGCG-CAAGTACAAGAA 2337 Query 349939 TGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAA 349998 || ||| | || || ||||| | ||||| || | || || |||||| | || || Sbjct 2336 GGACATTAGCGACAACAAAAGAGCTGTCCGTCGTCTGCGCACCGCTTGTGAAAGAGCAAA 2277 Query 349999 GCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAA 350058 ||| || | || || | ||||| | ||||||||||| ||||| || ||| Sbjct 2276 GCGCACCCTGTCTTCCAGCACCCAGGCTAGCATTGAAATTGACTCTCTGTACGAGGGCGT 2217 Query 350059 AGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAG 350118 |||||||| | | || || || | ||||| ||||| || | || || || | Sbjct 2216 AGATTTCTATACCTCAATCACCAGGGCTCGTTTTGAGGAGCTCAACGCTGACCTCTTCCG 2157 Query 350119 AGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGAT 350178 | || | || || ||||| || | | ||||| || ||| ||| ||||| Sbjct 2156 TGGCACCTTAGACCCCGTGGAGAAGTCACTCCGTGATGCCAAGATGGATAAAGGGCAGAT 2097 Query 350179 TGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATC 350238 | |||| | || || || ||||| || || ||||| || || | || || | || Sbjct 2096 TCATGACATTGTGTTGGTCGGTGGCTCAACCCGTATCCCCAAGATCCAGAAGCTGCTCCA 2037 Query 350239 TGAGTTTTTTAATGGCAAAGAACCT--TCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 || || || ||||| |||| | || | ||| | || ||||||||||||||||| || Sbjct 2036 GGATTTCTTCAATGG-AAAGGAGCTGAACAAGAGC-ATCAATCCAGATGAAGCTGTGGCT 1979 Query 350297 TATGGTGCTG 350306 ||||| |||| Sbjct 1978 TATGGAGCTG 1969 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 ||||||| ||||| ||||| ||||| || ||||| ||||||| || || ||||||| Sbjct 3108 ATGCTGTAATTACGGTACCTGCCTACTTCAATGACTCCCAGCGCCAGGCCACTAAAGATG 3049 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||||| || | || | |||||||| | || || |||||||| || ||||| || | Sbjct 3048 CTGGCACAATCTCTGGCCTCAATGTTCTGCGTATCATCAATGAACCAACAGCTGCTGCCA 2989 Query 349728 TTGCATATGGGCTTGATAAAA 349748 | || |||||||| || |||| Sbjct 2988 TCGCCTATGGGCTGGACAAAA 2968 >seq17163 Length=10605 Score = 107 bits (118), Expect = 6e-18 Identities = 348/535 (65%), Gaps = 4/535 (1%) Strand=Plus/Plus Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || ||||| | || || || || ||||| || || | | || ||||||| || Sbjct 3106 CTCATCTTTGACCTGGGCGGCGGCACGTTTGACGTCTCCATCTTGACTATTGAAGACGGC 3165 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || | || || || || || || | || |||||||| || || || Sbjct 3166 ATCTTCGAGGTCAAGTCCACAGCAGGCGACACCCACTTGGGAGGAGAAGACTTCGACAAC 3225 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAA-ATTGATATTGGAGA 349950 || | || || || | || || ||||| |||| || | || || | || Sbjct 3226 CGCATGGTCAACCACTTCATCGGCGAGTTCAAGCG-CAAGTACAAGAAAGAAATCAGCGA 3284 Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010 || || ||| |||||||||| | || |||||||| | || ||||| || | || Sbjct 3285 CAACAAGAGGGCAGTGCGTCGCCTGCGCACGGCGTGTGAGAGGGCAAAGCGCACCCTGTC 3344 Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070 ||| | |||||| || |||||||| |||||||| || || ||||||| | Sbjct 3345 ATCCAGCACCCAAGCCAGCATTGAAATCGATTCTCTGTACGAAGGAGTCGATTTCTACAC 3404 Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGA 350130 || ||||| | || || || ||||| | ||| || || ||| ||| |||| Sbjct 3405 CTCAATTACCAGGGCCCGATTCGAAGAGCTGAACGCGGACCTGTTCCGAGGAACCCTGGA 3464 Query 350131 TCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGT 350190 ||||||||||| | | || || || ||| ||| |||||| | || | || Sbjct 3465 GCCTGTGGAAAAGGCTCTCCGTGACGCCAAGATGGACAAGGCTCAGATCCACGACATCGT 3524 Query 350191 TTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAA 350250 | ||||| ||||| || |||||||| || | || || | || || ||||| || Sbjct 3525 CCTGGTTGGAGGTTCCACTCGTATTCCCAAGATCCAGAAGCTGCTGCAGGACTTTTTCAA 3584 Query 350251 TGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 || || || | | | ||| | ||||| || |||||||| || || |||||||| Sbjct 3585 CGGGAAGGAGCTCAACAAGAGC-ATTAACCCTGATGAAGCAGTGGCCTATGGTGC 3638 >seq115624 Length=278 Score = 105 bits (116), Expect = 2e-17 Identities = 149/212 (70%), Gaps = 12/212 (6%) Strand=Plus/Plus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || || || || || || ||||| || || || || || || | || || || ||||| Sbjct 67 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCC 126 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTG------------ATCAGGAGGAATTCCT 140636 || || |||||||||||||| ||||| ||||| ||| ||||| || || Sbjct 127 AGCTGCTTTCCAGCAAAGATCAGACGCTGCTGNNNNNNNNNNNNATCTGGAGGGATGCCC 186 Query 140637 TCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGT 140696 ||||| ||||| |||||||| || || || ||||| |||||| || || || || || Sbjct 187 TCTTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGAATCACTGGGCTCCACCTCCAGG 246 Query 140697 GTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 || | |||||||| || || || || || || Sbjct 247 GTGATGGTCTTTCCAGTCAGGGTCTTCACGAA 278 >seq86445 Length=17332 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| ||||| || || || || || || ||||| |||||||| || || ||||| | Sbjct 11355 ATGCAGTTATCACAGTCCCTGCTTACTTCAATGACTCCCAGCGTCAAGCCACCAAAGACG 11414 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | |||||| ||| | ||||| || | || || ||||| |||||||||||||| | Sbjct 11415 CTGGAACCATTGCTGGGCTCAATGTGCTGCGCATCATCAATGAGCCCACTGCTGCAGCCA 11474 Query 349728 TTGCATATGGGCTTGATAAAA 349748 | || ||||| || || |||| Sbjct 11475 TCGCTTATGGCCTGGACAAAA 11495 >seq130219 Length=1929 Score = 86.0 bits (94), Expect = 2e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || ||||| ||||| | || || ||||| ||||| ||||| ||||| ||||| Sbjct 1327 TTCTGGATGTTATAGTCAGACAGAGTACGTCCATCCTCAAGCTGTTTGCCAGCGAAGATC 1268 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCT 140636 ||||| ||||||||||| ||||||||| Sbjct 1267 AGACGCTGCTGATCAGGGGGAATTCCT 1241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1512022945737744