Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq51664 387 2e-102 seq142310 98.7 1e-15 seq120612 96.9 4e-15 seq158314 91.5 2e-13 >seq51664 Length=13532 Score = 387 bits (428), Expect = 2e-102 Identities = 917/1361 (67%), Gaps = 51/1361 (4%) Strand=Plus/Plus Query 78508 AACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCG 78567 ||||| |||| ||| || ||| |||||||||| | ||||| | |||| | |||| Sbjct 10848 AACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCG 10907 Query 78568 TTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTC 78627 ||||| |||| |||||||||||| ||||| || ||||| || || | ||| || ||| Sbjct 10908 TTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTC 10967 Query 78628 CGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGCC 78681 | | || || | ||||| |||| || | |||| | ||| | | | Sbjct 10968 CTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGTTCGGTGGGC 11027 Query 78682 GCGATCCCCCACATGTCCGGTTGAAGGATACCCTCG--GACGCCGGCGACCCCTTGAACG 78739 || |||||||||| || ||||| |||| | |||| || || || | ||| Sbjct 11028 TTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACG--GGAGAGCCTGCGTACG 11085 Query 78740 TCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACA 78799 ||||||| | || ||| ||| || ||||| | | |||||| |||||||| | Sbjct 11086 TCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGA 11145 Query 78800 CAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGT-CGAACGA--AAGGC 78856 |||||||||| | || ||| | |||| || | | |||||| || || Sbjct 11146 TGACCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCT-TCGCTTTCGAACGGGTAACGC 11204 Query 78857 CGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCA 78916 | | |||||| |||| |||| || |||||||| || | ||||| | ||||||| Sbjct 11205 --ATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCT 11262 Query 78917 TGTTGCTCTTTCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCA 78973 ||||| |||| |||| |||| | || || |||| ||||||| ||||| Sbjct 11263 TGTTGGACTTTT---CCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTTGTTCA 11319 Query 78974 GGTTACGCGTGACGA---CCCGAGTCACCTCGTACAATTTGGCGAAATCAAAA-TGATTT 79029 || | |||||| | ||||| || ||| || |||||| | | Sbjct 11320 AATT---CTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAAGTCCGCT 11376 Query 79030 CCTT--TGATGAAAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCC 79086 || ||| | | | || ||| | || ||||| || ||||| || ||| || Sbjct 11377 CCGGGGTGACGTACATGTTGAGCGCA-ATTGAGGCCAGATTACACACCGCTACCTCATCG 11435 Query 79087 GGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTC 79146 |||| | |||||||||||||||||||| || |||||||||||||| | ||| Sbjct 11436 TGGCTGGTGTACTCGATGATTTCTGTGCACAGGTTGCTGGACTTGATGGTGCCCAGATTC 11495 Query 79147 TTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCA 79206 | |||||||||||| ||| |||||||| ||||| |||||| ||||| || || || Sbjct 11496 TGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCT 11555 Query 79207 ACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGA 79266 ||| || || |||| ||| ||| | | | | ||| || || |||| || Sbjct 11556 GTCTGGGACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACGCGCTTGAACTTC 11615 Query 79267 CCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGG 79326 ||||| | || | ||| | || | ||| ||||||| || ||| || Sbjct 11616 CCCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAAC 11675 Query 79327 CCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATG 79386 || |||||||||| || |||||||| ||||||||||| |||| || ||| |||| Sbjct 11676 CCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATG 11735 Query 79387 AAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCTCCTCGTCGCC 79445 || ||||| |||||||||||| |||| ||| ||||| | | | | |||||| | || Sbjct 11736 AACAGGTCGGGGATCCACAGG-CCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCC 11794 Query 79446 CTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGAT 79505 |||| ||||| || ||||| | | |||||||||||| |||||||| || || Sbjct 11795 GGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACAT 11854 Query 79506 GGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAA 79565 |||||| | || | |||| ||||||||||| |||||| || |||||||||||| | Sbjct 11855 GGCGAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTA 11914 Query 79566 AACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACC 79625 ||||| |||||||| ||||| |||| || | |||||| || ||| || |||| Sbjct 11915 AACTCTCAGCATGGGGACGATCCCGTTGGAGTTGCCGTTGGTGCCGGCGA----TGTA-- 11968 Query 79626 GCTCGCCCGAATGTTC-GA-GCAG----TGG--ATTCCGATGCCCCCGGACCACTTGGAG 79677 |||| |||| ||||| || |||| | | | || || ||||||| | |||||| Sbjct 11969 GCTC-CCCG-TTGTTCTGATGCAGCTTATCGCCACACCAATTCCCCCGGCTGATTTGGAG 12026 Query 79678 ATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCG 79737 | | ||||| | ||| ||||| ||||| ||||| ||||| |||||| ||||| ||| Sbjct 12027 ACCAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCG 12086 Query 79738 ACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTC 79797 | |||||||||||| |||| |||||| |||| || || ||||||||||| || || | Sbjct 12087 AGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAG 12146 Query 79798 GCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC 79838 ||||| ||||| |||| | || ||| | ||||||||| Sbjct 12147 GCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTC 12187 Score = 271 bits (300), Expect = 8e-68 Identities = 873/1336 (65%), Gaps = 53/1336 (4%) Strand=Plus/Minus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||| ||||| || |||||| ||||| ||||| | || || || |||||| Sbjct 12187 GAGACGTACAACCTGCTGTCAGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAAC 12128 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || || || |||| || ||| |||| ||||| ||||| | || ||||| || |||||| Sbjct 12127 GCAGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGC 12068 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 || || ||||| ||||| ||||| ||| | ||||| | ||||||| | ||||||| Sbjct 12067 ATCGAAGGCATTTACGACACGCTGAAGCAATGCGCCCTGGTCTCCAAATCAGCCGGGGGA 12008 Query 19346 ATCGG------GATCCACTGC-TC-GAATATCCGGTCGAGTGGTACACGAATCAATGGGA 19397 || || ||| |||| || ||| | | || | | |||| || || | Sbjct 12007 ATTGGTGTGGCGATAAGCTGCATCAGAACAACGGG----GAGCTACA----TCGCCGGCA 11956 Query 19398 CGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGT 19457 | ||||| || |||| |||||||| ||||| | || | |||||||||||| | | Sbjct 11955 CCAACGGCAACTCCAACGGGATCGTCCCCATGCTGAGAGTTTACAACAACACGGCACGTT 11896 Query 19458 ACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGC 19517 ||||| ||||||| ||| ||| | || | |||||||| ||||| ||||| |||| Sbjct 11895 ACGTCGACCAGGGCGGCAACAAGAGACCAGGAGCCTTCGCCATGTACCTGGAGCCCTGGC 11836 Query 19518 ACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCT 19577 |||| ||||| | || ||||| || || |||| || | |||||| | | Sbjct 11835 ACGCCGACGTGTTTGACTTCCTGGAGCTAAAGAAGAACACCGGAAAGGAGGAGCAGAGAG 11776 Query 19578 GTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAG 19636 | ||||| ||| |||||| ||||||| || ||||| |||||| ||| || |||| Sbjct 11775 CCAGGGACCTTTTCTACGGCC-TGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGC 11717 Query 19637 GACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGC 19696 |||| || ||| |||||||| || |||| ||||| || | ||| || || Sbjct 11716 AACGAGGACTGGTCTCTGATGTGTCCCAACGAGTGCCCAGGGTTGGACGAGTGCTGGGGG 11657 Query 19697 GAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTC 19756 |||| |||| | || | ||| | || | ||||| ||||||| ||||| Sbjct 11656 GAGGAGTTCGAAAAGCTCTACACCTCCTATGAGAAGCAGGGGAAGTTCAAGCGCGTGGTG 11597 Query 19757 CGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTAC 19816 ||| | | | | ||| || ||| || | |||| || || ||||| || ||| Sbjct 11596 AAGGCTCAGCAGTTGTGGCACGCCGTTATCGAGTCCCAGACAGAAACTGGCACGCCATAC 11537 Query 19817 ATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAG 19876 ||| ||||| |||||| ||| ||| || || |||| | ||| | |||||| Sbjct 11536 ATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAGAATCTGGGCACCATCAAG 11477 Query 19877 TCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGT 19936 || ||||||||| || |||||||| ||| ||| | || ||| || |||||| Sbjct 11476 TCCAGCAACCTGTGCACAGAAATCATCGAGTACACCAGCCACGATGAGGTAGCGGTGTGT 11417 Query 19937 AATCTGGCGTCCCTGTGC-CTGCCGACTTTCGTCA---AGGCCTCCTCCTTCGACTTTGC 19992 |||||||| || | ||| || | | ||||| || | || |||||| Sbjct 11416 AATCTGGCCTCAAT-TGCGCTCAACATGTACGTCACCCCGGAGCGGACTTTTGACTTTAA 11358 Query 19993 CAAATTGTACGAGGTGACCCGGG---TCGTCACGCGTAATCTGAATCGCGTCATCGATCG 20049 ||| || |||||| | |||||| | ||| |||| ||||||| Sbjct 11357 AAAACTGGCATCTGTGACCAAAGTAATCGTCAAG---AATTTGAACAAGATCATCGAAAT 11301 Query 20050 GAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGC 20106 |||| || || | |||| |||| ||||| || | ||||||| ||||||| | Sbjct 11300 TAACTACTATCCAGTGCCCGAAGCGG---AAAAGTCCAACAAGCGCCACAGGCCGATTGG 11244 Query 20107 GATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCC 20166 || |||||||| || |||| || | ||||| | | | | | ||||| | | Sbjct 11243 AATTGGCGTCCAAGGTTTGGCGGATGCCTTCATCCTCATGCGTTACCCGTTCGA-AAGCG 11185 Query 20167 CA-AGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGG 20225 | |||| | ||| || | |||||||||| | | |||||||| || ||||| Sbjct 11184 AAGAGGCTCAGCTGCTGAATATTCAAATCTTCGAGGTCATCTACCACGCCGC---CCTGG 11128 Query 20226 AATCG---TGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCG 20282 | || ||||| || ||| ||| |||||| |||||||||| | || || |||| Sbjct 11127 AGGCGAGCTGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGCAGGCTCTCCCG 11068 Query 20283 CGTCCGAGGGTATCCTCCAGCCGGACATGTGGG-------GCGTCACTGAGAATG-AGTT 20334 | |||| ||||| ||| |||||||||| || ||| || | || | Sbjct 11067 TCAGCAAGGGCATCCTGCAGTACGACATGTGGGAGAAGAAGC-CCACCGA-ACTGCTGGA 11010 Query 20335 TTGGAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGC 20394 |||| || |||| ||||| | |||||| | | ||| |||| | || Sbjct 11009 CTGGAAGCTGCTGAAGGAGAAGATCGCCATCCACGGCGTGAGGAACAGCCTGCTGCTGGC 10950 Query 20395 GCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTA 20454 || ||||| || ||||| |||||||||||| |||| ||||||||| | |||| | || Sbjct 10949 CCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCCTA 10890 Query 20455 CACGACCAACATCTAC 20470 ||| | |||||||||| Sbjct 10889 CACCAGCAACATCTAC 10874 >seq142310 Length=1461 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| || ||||||||||| ||||| ||| ||| || || |||||||| ||| | || Sbjct 926 GTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCCATCTTTTGGCTCAAGAAGAGAGGA 867 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 || ||||| ||||| | | |||||||||||||||| |||||| |||| Sbjct 866 CTAATGCCTGGCCTTACCTACTCCAACGAGCTGATTAGCCGGGATGAGG 818 >seq120612 Length=9325 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| || ||||||| ||| || ||||||||||| | |||| ||||||||| Sbjct 2701 CTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCT 2642 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 |||| ||| ||||||||||||||| |||||| ||||| ||||| || Sbjct 2641 CTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTC 2594 >seq158314 Length=2971 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| ||||||||||||||||| || ||| | || |||||||| || ||| | || Sbjct 1836 CGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCCTCCATCTTCTGGCTGAAGAAGAGAGG 1895 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 ||| ||||| || |||| |||||||||||||| || | | ||||||| Sbjct 1896 CCTGATGCCCGGTCTGACCTTCTCCAACGAGCTAATCAGCAGAGACGAGG 1945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547383539301120