Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq51664 190 2e-43 seq59033 86.0 7e-12 seq142310 84.2 2e-11 >seq51664 Length=13532 Score = 190 bits (210), Expect = 2e-43 Identities = 484/728 (66%), Gaps = 14/728 (2%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||||||| || | || | |||| || || |||||| | || || || ||||| Sbjct 12188 TGAGACGTACAACCTGCTGTCAGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAA 12129 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||| || || || || ||| |||| |||||||||||| | || ||||| || ||| Sbjct 12128 CGCAGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAG 12069 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||||| ||||| ||||| ||||| ||| | || |||| ||||||| | | || || Sbjct 12068 CATCGAAGGCATTTACGACACGCTGAAGCAATGCGCCCTGGTCTCCAAATCAGCCGGGGG 12009 Query 53422 TATCGGTATCCACTGCTCGAACGTCCGTGCGAAC----GGCACACCAATCAAGGGGACGA 53477 || ||| | || || | | | |||| || | ||| || || | Sbjct 12008 AATTGGTGT----GGCGATAAGCTGCATCAGAACAACGGGGAGCTACATCGCCGGCACCA 11953 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 ||||| | || | || ||||| || ||||| | || | |||||||||||| || |||| Sbjct 11952 ACGGCAACTCCAACGGGATCGTCCCCATGCTGAGAGTTTACAACAACACGGCACGTTACG 11893 Query 53538 TCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCAC 53596 || ||||||| || ||| | | ||| | | |||||||| ||||| ||||| |||||| Sbjct 11892 TCGACCAGGGCGGCAACAAGAGACCAGGAG-CCTTCGCCATGTACCTGGAGCCCTGGCAC 11834 Query 53597 GCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC 53656 |||||| | | || || || ||||| ||| || | || ||| | | | Sbjct 11833 GCCGACGTGTTTGACTTCCTGGAGCTAAAGAAGAACACCGGAAAGGAGGAGCAGAGAGCC 11774 Query 53657 CGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 | ||||| || ||| || |||||||| || ||||| |||||| | | ||||||| | Sbjct 11773 AGGGACCTTTTCTACGGC-CTGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGCAA 11715 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTG 53774 |||||| |||| |||||||| || ||||||||||| || | | | ||| || || | Sbjct 11714 CGAGGACTGGTCTCTGATGTGTCCCAACGAGTGCCCAGGGTTGGACGAGTG-CTGGGGGG 11656 Query 53775 AGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCA 53834 ||||||| | || | || | || | ||||| | |||| ||| | Sbjct 11655 AGGAGTTCGAAAAGCTCTACACCTCCTATGAGAAGCAGGGGAAGTTCAAGCGCGTGGTGA 11596 Query 53835 AGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACA 53894 |||| | || | ||| | || | || || |||| || || || ||||| |||| Sbjct 11595 AGGCTCAGCAGTTGTGGCACGCCGTTATCGAGTCCCAGACAGAAACTGGCACGCCATACA 11536 Query 53895 TGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAAT 53954 || ||||| || | |||| |||||||||||| |||| | ||| |||||| | Sbjct 11535 TGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAGAATCTGGGCACCATCAAGT 11476 Query 53955 CGAGCAAC 53962 | |||||| Sbjct 11475 CCAGCAAC 11468 Score = 82.4 bits (90), Expect = 8e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| |||| || ||||| || || || || || |||||| |||||||||||||| | Sbjct 10961 CCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 10902 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 |||| | ||||| | |||||||||| ||| || ||| | || |||||| || Sbjct 10901 CATCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTTCAGAT 10842 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG 55639 ||||| || || |||| |||||| Sbjct 10841 CGTCAACCCTCATCTGCTCAAAGACCTG 10814 >seq59033 Length=49050 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| ||||| || || || ||| | || ||||| || || Sbjct 8473 GTGAAGATGTAACGAGGGCTGGCAGCGTCTTTACCTCCATTGATGCGAGTACCAAACTGA 8532 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||| ||||||| |||||||||||| || |||||||| || Sbjct 8533 CCCAGTGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTCACG 8592 Query 117425 ATCGT 117429 || || Sbjct 8593 ATGGT 8597 >seq142310 Length=1461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||| | ||| |||| || || || | | |||||||||||| ||||| | |||||| Sbjct 820 TCATCCCGGCTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCTTG 879 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||||||||||||| ||| || || |||||||||||| || || ||| || || Sbjct 880 AGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCCGCGAAAGCC 939 Query 74892 ACAA 74895 |||| Sbjct 940 ACAA 943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546077462390400