Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq51664 205 1e-47 seq115624 140 4e-28 seq48423 118 1e-21 seq13309 118 1e-21 seq47767 111 2e-19 seq120612 98.7 1e-15 seq65395 87.8 2e-12 seq158314 84.2 2e-11 seq60932 84.2 2e-11 seq110159 82.4 9e-11 >seq51664 Length=13532 Score = 205 bits (226), Expect = 1e-47 Identities = 806/1238 (65%), Gaps = 50/1238 (4%) Strand=Plus/Plus Query 80540 CCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597 |||||||||||| ||||| |||||||| | |||| ||||| || ||| |||||||||| Sbjct 11035 CCCACATGTCGTACTGCAGGATGCCCTTGCTGACG--GGAGAGCCTGCGTACGTCTCGTA 11092 Query 80598 CGGGCC---CTCCGTCTTGGCCAGCTCACA---CGACTCCATAAGGGCCGCGTGATAAAT 80651 ||||| ||| | ||||||||| || || |||| ||||| ||||| || || Sbjct 11093 GGGGCCGAGCTCGG---CGGCCAGCTCGCAGCTCGCCTCC---AGGGCGGCGTGGTAGAT 11146 Query 80652 GCACTCAAAGACGCCCTTGTTCA-CACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCA 80710 | ||| |||| | |||| || | | |||| | | ||||||| | | || Sbjct 11147 GACCTCGAAGATTTGAATATTCAGCAGC-TGAGCCTCTTCGCTTTCGAACGGGTAACGCA 11205 Query 80711 TCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGT 80770 | | ||||| | || |||| || || ||||| || | ||||| | ||||||||||| Sbjct 11206 TGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGT 11265 Query 80771 TCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGC 80830 | || || || || || | ||| || ||||| | ||||||| ||||| || | Sbjct 11266 TGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTTGTTCAAATT-C 11324 Query 80831 GTG-TAACAACCCGTGTAACATCATG-AAGTTTCTGAAAGTCGAA--TTGGTTCC-CCTT 80885 || | || || ||| ||| ||||| | |||||| || | | ||| | Sbjct 11325 TTGACGATTACTTTGGTCACA-GATGCCAGTTTTTTAAAGTCAAAAGTCCGCTCCGGGGT 11383 Query 80886 CAC--AAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCT 80943 || | ||| | || | || |||||||| ||||| || ||||| || | || Sbjct 11384 GACGTACATGTTG--AGCGCAATTGAGGCCAGATTACACACCGCTACCTCATC-GTGGCT 11440 Query 80944 -GTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 || |||||| |||||| ||||||| || ||||| || || ||||| || | || Sbjct 11441 GGTGTACTCGATGATTTCTGTGCACAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTG 11500 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||| ||| |||||| ||||| ||||| |||||| || || || || || ||| Sbjct 11501 GTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTG 11560 Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC---CTTGCGGAATTTGCC 81119 |||| || | ||||| ||| | || | ||||| ||||| ||| ||| || || Sbjct 11561 GGACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACGCGCTT---GAACTTCCC 11617 Query 81120 TTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGT 81178 | | |||| || ||| ||||| ||||||| | || || | Sbjct 11618 CTGCTTCTCATAGGAGGTGTAGAGCTT-TTCGAACTCCTCCCCCCAGCACTCGTCCAACC 11676 Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238 ||||||||||||| || |||||||| |||||| || | |||| || |||||||| Sbjct 11677 CTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGA 11736 Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298 | ||| |||||||| ||| || ||| ||||| | | | | |||||| | || Sbjct 11737 ACAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGG 11796 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358 ||| | ||| || ||||| | | ||| || ||||| |||||||| |||| || Sbjct 11797 TGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGG 11856 Query 81359 CGATCGACCCCTTGCGAC----GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAAT 81414 ||| | | ||| | | ||| ||||||| ||||||||| || || ||| | Sbjct 11857 CGA-AGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAA 11915 Query 81415 ACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCC 81474 || | || ||| |||| ||| || | || | ||||| || || |||| |||| Sbjct 11916 ACTCTCAGCATGGGGACGATCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCC 11975 Query 81475 TTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCA 81534 | | | | ||| || | | ||| || || || | | || || | | | || Sbjct 11976 GTTGTTCTGATGCAGCTTATCGCCACACCAATTCCCCCGGCTGATTTGGAGACCAGGGCG 12035 Query 81535 CACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAA 81594 || | |||| || || ||||| || |||||||| || | ||||||| | |||| ||| Sbjct 12036 CATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAG 12095 Query 81595 CAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATG 81654 ||||| |||| ||| || || || | || || ||||| || || |||| ||||| || Sbjct 12096 CAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTG 12155 Query 81655 AAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTCACC--G 81711 || | | ||||| ||||| || || || || | |||| | || || || | | Sbjct 12156 AACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCG-ATGTC--CATCTTG 12212 Query 81712 TGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 || || |||| || || | ||| | ||||| ||| || Sbjct 12213 TGGATCCCGACGGCCACTCTCATGAGCATGTGCTGCGG 12250 >seq115624 Length=278 Score = 140 bits (154), Expect = 4e-28 Identities = 162/221 (73%), Gaps = 12/221 (5%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || || ||||| || || || ||||| ||| | ||||| |||| Sbjct 278 TTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAGTGATTCCATT 219 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA------------C 27522 | ||| | ||||||||||| |||||||| ||||| || |||||||| Sbjct 218 GAAAACGTCAAGGCTAAAATCCAGGACAAAGAGGGCATCCCTCCAGATNNNNNNNNNNNN 159 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || |||||||| ||||| || || || | || ||||| | ||||| Sbjct 158 CAGCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTAC 99 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 || |||| || |||||||| || || || ||||||||||| Sbjct 98 AACATCCAGAAAGAATCCACCCTCCACCTGGTCTTGCGTCT 58 >seq48423 Length=831 Score = 118 bits (130), Expect = 1e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || ||||| ||||| || || || ||||| ||| | | Sbjct 138 AATGCAGATCTTCGTGAAGACCCTGACCGGGAAGACCATCACCCTGGAGGTGGAGCCCAG 79 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| |||| | || || || || ||||| ||||| || || ||||||||||| Sbjct 78 TGACACCATTGAAAATGTTAAAGCAAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCA 19 Query 27525 GCAGCGTCTAATTTTTGC 27542 ||||||||| || ||||| Sbjct 18 GCAGCGTCTGATCTTTGC 1 >seq13309 Length=2637 Score = 118 bits (130), Expect = 1e-21 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||||||| | | Sbjct 2510 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 2569 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| ||||||| || || ||||||||||| || ||||| ||||||||| Sbjct 2570 GATACTATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 2629 Query 27526 CAG 27528 ||| Sbjct 2630 CAG 2632 >seq47767 Length=302 Score = 111 bits (122), Expect = 2e-19 Identities = 130/179 (73%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 27445 ACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAG 27504 || || ||||| ||| | |||| ||||||| |||| | ||||| || || || ||||| Sbjct 1 ACCCTGGAGGTGGAGCCCAGTGACAGCATTGAAAATGTCAAGGCCAAGATCCAAGACAAA 60 Query 27505 GAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGAT 27564 ||||| || |||||||||||||||||||| || |||||||| ||||| || || || Sbjct 61 GAGGGCATCCCTCCAGACCAGCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGA---- 116 Query 27565 CGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||||| || |||| ||||| ||||| || ||||| || | ||||| Sbjct 117 --NNNNNNNNNAGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCT 173 Score = 86.0 bits (94), Expect = 7e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || || || ||||| || || || ||||| ||| | | Sbjct 183 AATGCAGATCTTTGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAG 242 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| |||| ||| | ||||| || || ||||| ||||| || || ||||||||||| Sbjct 243 TGACTCAATTGAAAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCA 302 >seq120612 Length=9325 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| ||||| |||||||||| ||| || || || || ||||| || | |||||| Sbjct 2702 ACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGC 2643 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| |||||||||||| |||||| || || ||||| ||| ||| || | Sbjct 2642 TCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATT 2583 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 || |||||||| ||| | || | ||||| ||||| Sbjct 2582 CGATGATGGCGTACCACACCTGCTGGGCCTTCACCAC 2546 >seq65395 Length=286 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || |||||||| || || |||||||||||| | | || | ||||| || ||||| Sbjct 174 CTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGCGACACCATTGAGAACGTGAAG 233 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTT 27539 || || || |||||||| || || ||||| |||||||||||| | || || || Sbjct 234 GCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTT 286 >seq158314 Length=2971 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 ||||| ||||| ||||| ||||| || ||| || || |||||||| || ||| | ||| Sbjct 1837 GTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCCTCCATCTTCTGGCTGAAGAAGAGAGGC 1896 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGG 64846 |||||||| |||||| | || || |||||||| ||| | ||||||| Sbjct 1897 CTGATGCCCGGTCTGACCTTCTCCAACGAGCTAATCAGCAGAGACGAGG 1945 >seq60932 Length=4876 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || |||||||| | | Sbjct 4819 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGC 4760 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 || | ||||| || |||| || || || ||||||||||| || ||||| ||||| Sbjct 4759 GACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGA 4704 >seq110159 Length=1153 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||||||||| ||| | | Sbjct 1056 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGCCCAGC 1115 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAA 27503 || | ||||| || ||||||| || || |||||||| Sbjct 1116 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAA 1153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569123812181760