Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq137484 165 7e-36 seq29309 122 7e-23 >seq137484 Length=8150 Score = 165 bits (182), Expect = 7e-36 Identities = 141/174 (81%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||| || || || Sbjct 3807 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGAAGTGCATAGCTGGCGATATTGAAAGGC 3866 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 |||||||| ||||| || || || | |||||||||||||||||| ||||| ||||||| | Sbjct 3867 ACCCCGAGACCCATATCACCAGAGCGCTGGTAGAGCTGACACGACAGCTCGCCGTCGCAC 3926 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 ||||| || ||||||| || |||||| || || |||||||||||| || |||| Sbjct 3927 ACGTAGAATTGACACAGGGTGTGGCAGGGTGGCAGAGCCATGAGGGGCAGGTCT 3980 Score = 136 bits (150), Expect = 3e-27 Identities = 136/175 (78%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||||| |||||||| || || || |||||||||||||| || ||||| ||||||||||| Sbjct 5629 CATGTTTGTGTACTCGGCCCCAAAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTC 5688 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || || || | | ||||||| ||||||| |||| | ||| || |||||||| Sbjct 5689 GCCTTCCTCTCGATCTGTGAAGCCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTC 5748 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30396 ||| ||||| ||||| ||| | |||||||| |||| |||||| || |||| |||| Sbjct 5749 CCAAATCTTCACCCCTTTCGCTGAGAGCTCCTTGGCGTTTGTTGATCCCTGTGAC 5803 >seq29309 Length=5917 Score = 122 bits (134), Expect = 7e-23 Identities = 88/102 (86%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 110407 TCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 110466 |||||||||||||| | ||| ||||||| |||||||||| ||||| || |||||||| Sbjct 1050 TCCCTGCTGAGGACAATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCTGGGATGGAA 1109 Query 110467 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||| || ||||| ||||| ||||||||||||||||||||| Sbjct 1110 AACCATGTTTTTCTGCCCATGATCACCACGTTCTGCTTGCCT 1151 Score = 82.4 bits (90), Expect = 6e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 110574 CCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCGGCCACGATACCGTT 110633 ||| ||||| | ||| || ||||||||||||| ||| |||||| | ||||||||| |||| Sbjct 5271 CCAGGGCAGGTTTCCATTATTCCCGATGCCCAGGTCCGGACACACCGCCACGATAGCGTT 5330 Query 110634 CAGAATGAGGGGCAT 110648 ||||||| ||| ||| Sbjct 5331 CAGAATGCGGGACAT 5345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405486164817216