Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq137484 131 2e-25 >seq137484 Length=8150 Score = 131 bits (144), Expect = 2e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| ||||||||||| ||||||||||| || || || || |||| |||||| ||||| Sbjct 5639 TACTCGGCCCCAAAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTCGCCTTCCTCT 5698 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 ||| || ||| ||| | |||||||| |||| || ||||| | |||||||| |||||| Sbjct 5699 CGATCTGTGAAGCCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTCCCAAATCTTC 5758 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGT 7050 ||||| | ||||||||||||| ||| || Sbjct 5759 ACCCCTTTCGCTGAGAGCTCCTTGGCGTTTGT 5790 Score = 131 bits (144), Expect = 2e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 34295 ACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGA 34354 || ||| ||||||||||||| | ||||||||||| |||||||| | ||||| || Sbjct 5790 ACAAACGCCAAGGAGCTCTCAGCGAAAGGGGTGAAGATTTGGGACGCCAATGGGTCCCGG 5731 Query 34355 GACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTAC 34414 |||| |||||||| | ||| ||| || ||| ||||| |||||| |||| || || || Sbjct 5730 AACTTCCTGGACAACCTGGGCTTCACAGATCGAGAGGAAGGCGACCTGGGACCCGTGTAT 5671 Query 34415 GGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || ||||||||||| ||||||||||| ||||| Sbjct 5670 GGTTTCCAGTGGAGGCACTTTGGGGCCGAGTA 5639 Score = 123 bits (136), Expect = 2e-23 Identities = 126/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| ||||| || || || || || || ||||| |||||||| | ||| Sbjct 3819 TGTGCGATCATGTAGGTGAGAAGTGCATAGCTGGCGATATTGAAAGGCACCCCGAGACCC 3878 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGAATTG 6738 || || || || || || |||||||| || |||||||| || |||| ||||||||||| Sbjct 3879 ATATCACCAGAGCGCTGGTAGAGCTGACACGACAGCTCGCC-GTCGCACACGTAGAATTG 3937 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || ||||||||||| || || || ||||| || || || || Sbjct 3938 ACACAGGGTGTGGCAGGGTGGCAGAGCCATGAGGGGCAGGTC 3979 Score = 123 bits (136), Expect = 2e-23 Identities = 126/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAA 34623 || || || || ||||| || || || ||||||||||| || ||||||||||| |||| Sbjct 3979 GACCTGCCCCTCATGGCTCTGCCACCCTGCCACACCCTGTGTCAATTCTACGTGTGCGAC 3920 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 || |||||||| || |||||||| || || || || || ||||| | |||||||| || Sbjct 3919 -GGCGAGCTGTCGTGTCAGCTCTACCAGCGCTCTGGTGATATGGGTCTCGGGGTGCCTTT 3861 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||| || || || || || || ||||| ||||||||||| || Sbjct 3860 CAATATCGCCAGCTATGCACTTCTCACCTACATGATCGCACA 3819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447329745250560