Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq48423 109 1e-18 seq115624 107 4e-18 seq60932 102 2e-16 seq13309 100 7e-16 seq47767 91.5 3e-13 seq143157 89.7 1e-12 seq65395 86.0 1e-11 seq110159 84.2 5e-11 >seq48423 Length=831 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| || || || ||||| ||||| | |||||||| |||||||||||| ||| Sbjct 1 GCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTTGCTTTA 60 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||| ||||||||| | || ||||| || ||||| ||||| || || || ||| Sbjct 61 ACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCGGTCAGGGTC 120 Query 211098 TTTACAAACACCTGCATTTT 211117 || || || | ||||||||| Sbjct 121 TTCACGAAGATCTGCATTTT 140 >seq115624 Length=278 Score = 107 bits (118), Expect = 4e-18 Identities = 150/213 (70%), Gaps = 12/213 (6%) Strand=Plus/Plus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| ||||| || ||||| ||||| |||||||| || || | ||||| | || ||||| Sbjct 66 GACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTC 125 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG------------TCAGGAGGAACTCC 211012 ||||||||| || || ||||| || || || || || ||||| | || Sbjct 126 CAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGNNNNNNNNNNNNATCTGGAGGGATGCC 185 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || ||||||||||| || || |||||||| |||| ||| | || ||||| || Sbjct 186 CTCTTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGAATCACTGGGCTCCACCTCCAG 245 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||| |||||||| || || ||||| || || Sbjct 246 GGTGATGGTCTTTCCAGTCAGGGTCTTCACGAA 278 >seq60932 Length=4876 Score = 102 bits (112), Expect = 2e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || || |||| |||||||||||||||||||| ||||||||| || |||||||| | Sbjct 4704 TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTG 4763 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||| || ||||| ||||| || ||||| ||||| || || | |||||| Sbjct 4764 GGTTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 4819 >seq13309 Length=2637 Score = 100 bits (110), Expect = 7e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 || ||||| || |||| |||||||||||||||||||| ||||| ||||| || || Sbjct 2631 TGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATAGTA 2572 Query 211053 TCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 || | ||||||||||| ||||| ||||| || ||||| ||||| ||||| | |||| Sbjct 2571 TCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGC 2512 Query 211113 ATTTT 211117 || || Sbjct 2511 ATGTT 2507 >seq47767 Length=302 Score = 91.5 bits (100), Expect = 3e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 210996 TGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 ||||| ||||| | |||||||| ||||||||||| || |||||||| || | |||| Sbjct 302 TGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTTTCAATTGAGTCA 243 Query 211056 GAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | || ||||| || ||||| |||||||| || || ||||| ||||| | ||||||| Sbjct 242 CTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCATT 183 >seq143157 Length=3800 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || |||||||| || |||||||||||||||| | || ||| ||| ||||| |||||| Sbjct 1818 GGCAGAGGAGGGCAGTCTGCTCTGCGTTTTGCTCGTCTGAGAATGGAGAAGAGACACAAC 1877 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT---CAAAGACAACAAGTGT 139938 ||| ||||||| || || |||| || | ||| ||| | ||| |||| |||| | Sbjct 1878 TACGTGAGAAAGGTGGCTGAGACGGCTGTCCAGCTCTTTGTGTCCAACGACA--AAGT-T 1934 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || ||||| || || || || |||||||| ||||| | || Sbjct 1935 AATGTGGCAGGAATGGTCTTGGCTGGCTCTGCCGACTTCAAGACCGAGCTCAGCCAGTCG 1994 Query 139999 GACTTTTTTGACCC 140012 ||| | || ||||| Sbjct 1995 GACATGTTCGACCC 2008 >seq65395 Length=286 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 210981 AAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACG 211040 ||||| || | || ||||| || |||| ||||| |||||||||||||| ||||||| Sbjct 122 AAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTCACG 63 Query 211041 TTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTT 211100 || || || ||||| | || ||||| || ||||| ||||| || ||||| ||||| Sbjct 62 TTCTCAATAGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTA 3 Query 211101 AC 211102 || Sbjct 2 AC 1 >seq110159 Length=1153 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||||||||| |||||||| || |||||||| | || ||||| |||||| Sbjct 1153 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGAGTG 1094 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| || ||||| ||||| ||||| | |||||| || Sbjct 1093 ATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 1053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1156679975057520