Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq137484 152 4e-32 seq29309 113 4e-20 >seq137484 Length=8150 Score = 152 bits (168), Expect = 4e-32 Identities = 132/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||| || || ||| Sbjct 3807 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGAAGTGCATAGCTGGCGATATTGAAAGGC 3866 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 |||||||| ||||| || || || | |||||||||||| ||||| ||||| ||||||| | Sbjct 3867 ACCCCGAGACCCATATCACCAGAGCGCTGGTAGAGCTGACACGACAGCTCGCCGTCGCAC 3926 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||| || ||||||| || ||||| || || || |||||||| Sbjct 3927 ACGTAGAATTGACACAGGGTGTGGCAGGGTGGCAGAGCCATGAG 3970 Score = 120 bits (132), Expect = 2e-22 Identities = 119/153 (78%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| || ||||| ||||||||||| || || || | | |||| Sbjct 5651 AAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTCGCCTTCCTCTCGATCTGTGAAG 5710 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||| |||| | ||| || ||||||||||| ||||| ||||| ||| | Sbjct 5711 CCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTCCCAAATCTTCACCCCTTTCGCT 5770 Query 30137 GAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30168 |||||||| |||| |||||| || |||| |||| Sbjct 5771 GAGAGCTCCTTGGCGTTTGTTGATCCCTGTGAC 5803 >seq29309 Length=5917 Score = 113 bits (124), Expect = 4e-20 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 114290 TCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 114349 |||||||||||||| | ||| | ||||| |||||||||| ||||| || |||||||| Sbjct 1050 TCCCTGCTGAGGACAATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCTGGGATGGAA 1109 Query 114350 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||| || ||||| ||||| ||||||||||||||||| ||| Sbjct 1110 AACCATGTTTTTCTGCCCATGATCACCACGTTCTGCTTGCCT 1151 Score = 89.7 bits (98), Expect = 4e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 114443 AGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCT 114502 ||||| ||||| ||| ||||| | ||| || ||||||||||||| ||| |||||| | Sbjct 5257 AGTCTAACCGGCGTCCAGGGCAGGTTTCCATTATTCCCGATGCCCAGGTCCGGACACACC 5316 Query 114503 GCCACGATACCGTTCAGAATGAGGGGCAT 114531 ||||||||| ||||||||||| ||| ||| Sbjct 5317 GCCACGATAGCGTTCAGAATGCGGGACAT 5345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405339263424928