Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20]
166,448 sequences; 681,652,711 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq137484 152 4e-32
seq64622 93.3 3e-14
seq67862 86.0 5e-12
>seq137484
Length=8150
Score = 152 bits (168), Expect = 4e-32
Identities = 138/174 (79%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267
|| || |||| ||| || |||||||| ||||| || | ||||||||||| || || ||
Sbjct 3807 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGAAGTGCATAGCTGGCGATATTGAAAGGC 3866
Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327
|||||||| ||||| || || || | |||||||||||||||||| ||||| || ||||
Sbjct 3867 ACCCCGAGACCCATATCACCAGAGCGCTGGTAGAGCTGACACGACAGCTCGCCGTCGCAC 3926
Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381
||||| || ||||| | || |||||| || || |||||||||||| || ||||
Sbjct 3927 ACGTAGAATTGACACAGGGTGTGGCAGGGTGGCAGAGCCATGAGGGGCAGGTCT 3980
Score = 132 bits (146), Expect = 4e-26
Identities = 135/175 (77%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548
||||| |||||||| || || || |||||||| ||||| || ||||| |||||||||||
Sbjct 5629 CATGTTTGTGTACTCGGCCCCAAAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTC 5688
Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608
|| || || | | ||||||| ||||||| |||| | ||| || ||||||||
Sbjct 5689 GCCTTCCTCTCGATCTGTGAAGCCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTC 5748
Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 27662
||| ||||| ||||| ||| | |||||||| |||| |||||| || |||| ||||
Sbjct 5749 CCAAATCTTCACCCCTTTCGCTGAGAGCTCCTTGGCGTTTGTTGATCCCTGTGAC 5803
>seq64622
Length=1521
Score = 93.3 bits (102), Expect = 3e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 69157 GTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACG 69216
||||||||||||| ||||||||||| ||| || |||||||| | ||| || |||||
Sbjct 1277 GTGACCAGCTTGTTCTGATGACCTGTGAGTACAGAAAGGTGTATGCCTACGATGGAGAGA 1218
Query 69217 AGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTG 69276
|||||||| ||||| || | ||| ||| | | | |||||| ||||| |
Sbjct 1217 AGCTGCATTTGGTGTCTTCAAGCCTGAGGCAGCTACATTACAAGGGAATAAAATATCCAG 1158
Query 69277 CATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACATATG 69317
|| |||| ||||| | ||||||||||||||||| |||
Sbjct 1157 CACCGAAGAGATATTACAAAGGGGAGGCCTTCAAACACATG 1117
>seq67862
Length=730
Score = 86.0 bits (94), Expect = 5e-12
Identities = 113/157 (72%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 69157 GTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACG 69216
|||||||||| || ||||||||||| |||||| ||| |||| | ||| || ||| |
Sbjct 521 GTGACCAGCTCGTTCTGATGACCTGTGAGGACAGAAAGCTGTATGCCTACGATGGACAGA 462
Query 69217 AGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTG 69276
||||||| |||||||| | ||| ||| | | | ||||||| ||||| |
Sbjct 461 TGCTGCATTTGGTGGCTTTAAGCCTGAGGCAGCTACATTACAACGGAATAGAGTATCCAG 402
Query 69277 CATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACA 69313
|| | |||| ||||| |||||||||||||||||
Sbjct 401 CACCCAAGAGATATTACAGAGGGGAGGCCTTCAAACA 365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 368757623236688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |