Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq115624 118 8e-22 seq48423 107 1e-18 seq60932 82.4 5e-11 >seq115624 Length=278 Score = 118 bits (130), Expect = 8e-22 Identities = 165/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | ||| |||||||| || ||| || || ||||||||||| || Sbjct 45 CATGCCTCCCCTCAGACGCAAGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTC 104 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG------ 44220 || ||| ||| |||| ||||||||||| || |||||||||| ||||||||| Sbjct 105 GGAGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGNNNNNN 164 Query 44221 ------ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGT 44274 ||||| ||| | || || || ||| || || ||| | || | |||| Sbjct 165 NNNNNNATCTGGAGGGATGCCCTCTTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGA 224 Query 44275 GTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAA 44328 || || |||||||||| || || |||||||| || |||||||||||||| Sbjct 225 ATCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAA 278 >seq48423 Length=831 Score = 107 bits (118), Expect = 1e-18 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 44201 GCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTC 44260 |||||||||| ||||||||| |||| ||| | |||||||| ||| ||||| ||||| Sbjct 1 GCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTT-TGCTTT 59 Query 44261 AATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGT 44319 || || | |||||||| || |||||||||| || || ||||| || || ||||| Sbjct 60 AACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCGGTCAGGGT 119 Query 44320 CTTCACGAAGATTTGCAT 44337 |||||||||||| ||||| Sbjct 120 CTTCACGAAGATCTGCAT 137 >seq60932 Length=4876 Score = 82.4 bits (90), Expect = 5e-11 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGG 44279 ||||| || | |||||||| ||| ||||| |||| | |||| | ||||||||| Sbjct 4703 ATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG-GCTTTCACGTTCTCAATGGTGTCGC 4761 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||| ||||||| || || ||||| || ||||||||||| |||||||| |||||| Sbjct 4762 TGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 4820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359260128874416