Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq59648 161 1e-34 seq123429 134 2e-26 seq55935 134 2e-26 seq125785 91.5 2e-13 >seq59648 Length=15200 Score = 161 bits (178), Expect = 1e-34 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 8309 CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||| ||||| | ||||| || ||| | | ||| | |||||||| |||| ||| Sbjct 9644 CCCTGCACGTTATTGCAGACGAGCCTCTGCAGGGAGGCGGTGTTGACGATGTCGAAGCCC 9703 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 ||| || ||||| ||||| |||||||||||| |||| ||||||||| ||| |||| Sbjct 9704 ACGCTGCCTCCGAACGTGCTCGGCTTCCAGTACTCCGGTGAGCAGATGGGGTTTCCCATT 9763 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 | ||| ||||||||| | || ||||||| ||| | ||| |||| || |||||||||||| Sbjct 9764 AAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCATGGTCTCCCCAAAGATGGCGTTG 9823 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 | |||||||| ||||||| | || | ||| || ||||| || ||||||| Sbjct 9824 GTCCGGGGCTTCTCCACCAGCAGACCCGGGTAGAGTTCCACGGCGTCGACGT 9875 Score = 109 bits (120), Expect = 8e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || ||||||||||| || |||||| ||| | || || | | |||| Sbjct 11617 ATGAGCCGTGTGGTCTGGAAGAGCCTCTCGTCGTCCCAGCCCGGGTGGACCTCCTTCAAC 11676 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 || || ||||||| ||||||||| | |||||||| |||||||||||||| || || || Sbjct 11677 ACGTCACACACCCGGTTGTGTTCTCGTAGCCAGATGGTGGCGTACATCATCAGGCCGGGG 11736 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||||||| || ||||| || || ||||| | || ||||| || | ||||| Sbjct 11737 ACCAGGCCGAACGCCTCGTGGCCCACAGCGAAGCGGTGAGGGTCGGGAACGTGAGGAGGG 11796 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACA 9466 ||| ||||| || || || || || | |||||||||| Sbjct 11797 TAGTGCATGTCAACGCCCACCTCCTTTACTGTTGGGGGATACA 11839 Score = 98.7 bits (108), Expect = 1e-15 Identities = 202/296 (68%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| || || || || || || || ||||| || || || | | |||||||| | Sbjct 10758 CTTACCCGTCCAGCGATCTGATTGGTAAACGACTCCACGAGGTTGCCGATGCCGTGCTCC 10817 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | | | ||| || ||| |||| || ||| | |||| |||| | | | ||||| | Sbjct 10818 GTCACCACGGAGTTATTGAAGACAAACTGTTTA--TAGTTGTACTCTTTCTCCTCAATGT 10875 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 || | ||| ||||| |||| |||||||| |||| |||| |||||||| | || | Sbjct 10876 GGAAAGTATCGGGCATCAGAGGGTGCCAGTGGTACAGGGTGTTGAACTCGGACGAGATGC 10935 Query 9122 GATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAA 9180 | || ||||||||||| || | || ||||| ||||| | |||| |||| || Sbjct 10936 GGTTCTGGTACTGGAAGCGCTG-GTTGAACAGCAGCTCGGGGTCAAACTTGAGCTTGAAG 10994 Query 9181 TGGTAGCCGCTGAGCTGCTGAACGTATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 | |||||||| || ||||| ||||| | | | | ||| |||||||| || || Sbjct 10995 TTATAGCCGCTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 11050 >seq123429 Length=10729 Score = 134 bits (148), Expect = 2e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 8372 TCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGG 8431 ||||| || ||||||||||||||||||||| | |||||||||||| ||| |||| ||| Sbjct 3 TCTCCTCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTTGCCAGCAGG 62 Query 8432 CCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8491 ||||| |||||||| ||||| |||| ||| | || |||||||| ||||| | | || Sbjct 63 CCTTTCAGGGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAAGATACCAGTAGGG 122 Query 8492 CGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 || | ||||| | || | |||| ||| | ||||| ||| || | ||| ||||| || Sbjct 123 CGTGCTTTTTCTAGTAAAAGGCCGGGGTAAAACTCCAAAGCATCTATGTCACCGTAGAG 181 >seq55935 Length=8550 Score = 134 bits (148), Expect = 2e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 8372 TCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGG 8431 ||||| || ||||||||||||||||||||| | |||||||||||| ||| ||| ||| Sbjct 8187 TCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTTCCCAGCAGG 8128 Query 8432 CCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8491 || || |||||||| ||||| |||| ||| | || |||||||| || | ||||||| Sbjct 8127 CCCTTCAGGGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAACAGTCTGTTGGGA 8068 Query 8492 CGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 || | || |||| || || |||| ||| | ||||| ||| || | ||| ||||| || Sbjct 8067 CGTGTTTTCTCCAGCAGGATGCCGGGGTAGAACTCCAAAGCATCTATGTCACCGTAGAG 8009 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 9298 TTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGC 9357 ||||| | || || || ||||| || ||||| | ||| || ||||||||||| |||| Sbjct 3923 TTCAGGATGTCACAGACTCTGTTATGCTCCCTCAACCATATGGTGGCGTACATGGTGAGG 3864 Query 9358 CCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCG 9417 || || | |||||||| |||| ||||||| ||||||||| | | | || | | Sbjct 3863 CCCGGCAGGAGGCCAAATACCTCCTGACCGATGGCCAGACGCTTCTCTGGAGGGAAGTTT 3804 Query 9418 GGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACC 9473 |||||| | ||||||||| |||| || || | || || ||||| ||||| Sbjct 3803 TCAGGATAAACCATGTGCACAGGGACTTCAGCTACTGTAGGAGGGTACATCTCACC 3748 >seq125785 Length=15263 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || ||||||||||||||||||||||| | || || || || ||| ||| ||||||| Sbjct 12549 CCTCCGAAGGTGCTGGGCTTCCAGTAATCTGGAGAACATATAGGGTTTCCCAGGAGGCCT 12490 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGC 8484 || |||||||| || || |||| ||| | |||||||| || || ||||| Sbjct 12489 TTAAGGGAGAAGGGGGCGCCCATCTCTATCATGCTCTCTCCAAATATGGC 12440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715385266129920