Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq115624 116 9e-21 seq65395 87.8 4e-12 >seq115624 Length=278 Score = 116 bits (128), Expect = 9e-21 Identities = 161/226 (71%), Gaps = 16/226 (7%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACA--CCA 177987 |||||||| || || || ||||| || |||||||| |||||||| || ||| | ||| Sbjct 278 TTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGA--GCCCAGTGATTCCA 221 Query 177988 TCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGA----------- 178036 | || |||||||| || || ||||||||||| || |||||||| || Sbjct 220 TTGAAAACGTCAAGGCTAAAATCCAGGACAAAGAGGGCATCCCTCCAGATNNNNNNNNNN 161 Query 178037 -CCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATT 178095 ||||| || || ||||| || ||||| ||||| ||||| || | || || |||| | Sbjct 160 NNCAGCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACT 101 Query 178096 ATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 | ||| |||| |||||||| || || || || || ||| | || || Sbjct 100 ACAACATCCAGAAAGAATCCACCCTCCACCTGGTCTTGCGTCTGAG 55 >seq65395 Length=286 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/124 (77%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCG 177990 || || || ||||| || || || |||||||| ||||| || || ||| |||| || | Sbjct 1 GTTAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTCGA--GCCCAGCGACACTATTG 58 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 ||||||| ||| ||||| |||||||||||||| || || || |||||||| | || | Sbjct 59 AGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAGAGGCTGA 118 Query 178051 TCTT 178054 |||| Sbjct 119 TCTT 122 Score = 86.0 bits (94), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCA 177999 ||||| || || || |||||||| ||||| || || ||| ||||||| |||||||| | Sbjct 174 CTCACTGGCAAGACCATCACCCTTGAGGTTGA--GCCCAGCGACACCATTGAGAACGTGA 231 Query 178000 AACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTT 178054 | ||||| |||||||||||||| || || || |||||||| | || ||||| Sbjct 232 AGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTT 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201164104786912