Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq844 188 8e-43 seq954 89.7 6e-13 seq410 87.8 2e-12 >seq844 Length=176084 Score = 188 bits (208), Expect = 8e-43 Identities = 470/712 (66%), Gaps = 2/712 (0%) Strand=Plus/Minus Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366 ||| || ||||| || ||| ||||| | |||||| | || | ||| || || ||||| Sbjct 39182 ACCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCC 39123 Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 || || || || || ||||| || || || ||||| |||| || | | | || Sbjct 39122 TTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGT 39063 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 ||| || || || | || || || ||||| || ||||| || || || || || ||||| Sbjct 39062 TCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTA 39003 Query 54487 CGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546 |||||| || |||| ||| || ||| | || || || || | || | ||| | ||| Sbjct 39002 CGTCTCAATGGCTGCGTCGATGTCCATCTTGTGGATCCCGACGGACACTCTCATGAGCAT 38943 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 |||||| |||| || | | ||| ||| || |||| || |||||| |||| ||| Sbjct 38942 GTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAGT 38883 Query 54607 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTT 54666 || || || || ||||||| || || |||| ||| |||| || | |||||||| Sbjct 38882 CTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCG 38823 Query 54667 ATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCC 54725 || || | | | ||| | || | || | ||| || || || || || || Sbjct 38822 GTCTTTGTTCTCGAGAACGATGTCGAGCGT-CTCCTTGGAGATCATGGGCGAGTGGCGGT 38764 Query 54726 CATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttG 54785 ||||| || |||| ||||| | | |||| |||||| || || || | || || | Sbjct 38763 CATTTAAGGGGTTGATGTAGTTGTACAGGTCCTCCATCACGTCRCTGAACACCTTCTTCG 38704 Query 54786 TTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTT 54845 | |||||||| || ||||| ||||| || | || || || ||||| || || || || | Sbjct 38703 TCTCTTTGTGCAGGTTTGAGACGGCGATCCGTGCAGCGAGTATGGCGTAGTCGGGGTGCT 38644 Query 54846 GTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTC 54905 || || |||||| | || || || | ||| ||||| | || || || || || | Sbjct 38643 TAGTTGTGAGAGTGGCGGTGATCTCAGCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGC 38584 Query 54906 CATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGT 54965 | | || | || ||||| |||||||| | || | ||||| | |||| || Sbjct 38583 CGCTGTACAAACCCTGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCAGAGT 38524 Query 54966 TTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGAC 55017 | | || || || | || || ||| | |||||||| || |||||||| Sbjct 38523 TCAGTCCGTAGCACAGCTTCTGGATGCGACAGGTGATTTTGTCGAACATGAC 38472 >seq954 Length=166441 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || | |||||| | |||||||| | || || || |||||||| || | ||| | Sbjct 96063 CCTCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCT 96004 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||||| |||| || ||||| || || ||||| || || || ||||||||||| | Sbjct 96003 TGAGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCCGCAAAAG 95944 Query 24277 CAATAAGTC 24285 | | || || Sbjct 95943 CCACAATTC 95935 >seq410 Length=233677 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| || || |||||||||||||| || || || || | || || || | Sbjct 227048 CACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCAGGA 226989 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||| || || |||| || || |||||||| | || |||| ||||||||||| Sbjct 226988 GAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGTCCA 226929 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 || || || || || ||| | || | || ||||| |||||||| Sbjct 226928 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 226883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593603805634560