Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq5057 116 5e-21 >seq5057 Length=48575 Score = 116 bits (128), Expect = 5e-21 Identities = 184/257 (72%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 |||||||||||||||||||| ||||||||| | ||| || || ||||| || | || Sbjct 22291 GAACTTCTCGAAGTTCCAGGACACGTCGTTCCTGCAGACGGGGCTCCAGGTGATTAACTT 22232 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGT--AGG 83260 |||||| ||| ||| | | ||||||||| || |||| || |||| | ||| Sbjct 22231 GGGGTCAGTCATGAGGGCGGATGGGTCGTCGCTGGGGAATGGCA--GCTTCTCCTTCAGG 22174 Query 83261 AAGGCGAAGAGCGGAT--GTGCCCTTGCACCGTTGACCTCGCAC-TTCTCGAAGAGCATA 83317 || | || || |||| || |||| ||||| ||||| ||| ||||| | ||| | Sbjct 22173 AACACAAACAGGGGATGGGTATCCTT--CCCGTTCACCTC-CACTTTCTCCAGCAGCTGA 22117 Query 83318 AAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCA 83377 || || ||||| ||||||| |||||||||| || |||||| ||| | ||| || || Sbjct 22116 AACTTTGGCTCATAGCCGTTTCCAGGACGGATGTACTTCAGAGAAATGAGGATTTCCTCA 22057 Query 83378 TTCTGGGCGTTTTCCTG 83394 |||| | ||| ||||| Sbjct 22056 TTCTTGCAGTTCTCCTG 22040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608676014714880