Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq170 161 1e-34 seq9656 107 2e-18 seq11498 105 7e-18 seq2403 105 7e-18 seq954 95.1 1e-14 seq526 82.4 8e-11 >seq170 Length=344817 Score = 161 bits (178), Expect = 1e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| ||| | Sbjct 171724 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGC 171665 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | || | || || | ||||| || ||||| ||| | || || Sbjct 171664 GACACCATTGAGAACG-TGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 171606 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 171605 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 171546 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || ||||| ||| |||| |||||||||| Sbjct 171545 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGGGGCGG 171498 Score = 145 bits (160), Expect = 8e-30 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || ||||| ||||| |||||||| | || ||||| | Sbjct 171956 AAACATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGCC 171897 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || ||||| | | | |||| | |||| || || | ||||| || ||||| ||| | | Sbjct 171896 CAGCGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAG 171838 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| | || |||| || ||||| |||||||| || | ||||||||| ||||| Sbjct 171837 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACT 171778 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| || | || || ||||| || |||| ||||||| ||| Sbjct 171777 ACAACATCCAGAAAGAATCYACCCTCCATCTTGTCCTGCGTCTGAGGGGTGGC 171725 Score = 102 bits (112), Expect = 8e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 || ||||| ||| | |||||||| | || |||| || ||||| |||||||| || | Sbjct 176618 GAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGT 176559 Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 ||||||||| ||||||||||||||||| || | || || ||||| ||| |||| || Sbjct 176558 CGCACCCTCTCTGACTACAACATCCAGAAAGAATCTACCCTCCATCTTGTGCTGCGTCTG 176499 Query 40909 AGGGGCGGC 40917 ||||||||| Sbjct 176498 AGGGGCGGC 176490 >seq9656 Length=12402 Score = 107 bits (118), Expect = 2e-18 Identities = 108/143 (76%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 40757 TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGAC 40816 || ||||| |||||| || || | || || || ||||| || | || ||||| | | Sbjct 4 TGAAAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGCATYCCYCCAGAYCAGCAGMGKC 62 Query 40817 TCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGA 40876 | |||| || || || |||||||| || | ||||||||| ||||||||||||||||| Sbjct 63 TGATCTTTGCTGGMAAGCAGCTGGAAGAYGGYCGCACCCTCTCCGACTACAACATCCAGA 122 Query 40877 AGGAGGCCACGCTGCATCTAGTG 40899 ||||| |||| || ||||| ||| Sbjct 123 AGGAGTCCACCCTCCATCTTGTG 145 >seq11498 Length=8624 Score = 105 bits (116), Expect = 7e-18 Identities = 102/127 (80%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCT-TGAACGACAACGAGCGCCAT 116743 ||||||| |||||||||||| | ||||||| | || |||| ||| ||||| | | Sbjct 6114 AGGTGGATCTGTCCAAGGACCTGCAGAACTGGGA-CTCTCTGAAGGACGACGAGAGGTAC 6056 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| |||| || || ||||||||||||||||||||||||||||| ||| Sbjct 6055 TTCATCTCTCACGTGTTGGCGTTCTTTGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 5996 Query 116804 GTCGAGC 116810 || |||| Sbjct 5995 GT-GAGC 5990 Score = 105 bits (116), Expect = 7e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||| |||||||| || || ||||| | |||||||| || |||| ||| Sbjct 6416 GAGCCGCTGCTGAAGGAGAACCCTCGTCGCTTCGTCGTCTTCCCCATCCAGTACCACGAC 6357 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||||||||| || |||||||| | |||||||| Sbjct 6356 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCAGAGGAGGT 6304 Score = 89.7 bits (98), Expect = 5e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||| ||||||||| | |||||| |||| ||||| || || || Sbjct 5689 GGTGGAGCGCTTCACACAGGAAGTGCAGGTGACGGAGGCGAGGTGTTTCTATGGTTTCCA 5630 Query 116863 GATCGCCATGGAGAACGTGCACTCGGA 116889 |||||||||||||||| | ||||| || Sbjct 5629 GATCGCCATGGAGAACATCCACTCAGA 5603 >seq2403 Length=96071 Score = 105 bits (116), Expect = 7e-18 Identities = 104/128 (81%), Gaps = 5/128 (4%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCT-TGAACGACAACGAGCGCCA 116742 ||||||| |||||||||||| | ||| ||||||| | || |||| ||| ||||| | Sbjct 94830 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGA-CTCTCTGAAGGACGACGAGAGGTT 94887 Query 116743 TTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT 116802 |||||| |||||| |||| || || ||||||||||||||||||||||||||||| || Sbjct 94888 CTTCATCTCTCACGTGTTGGCGTTCTTTGCCGCCAGCGACGGCATCGTCAACGAGAACCT 94947 Query 116803 GGTCGAGC 116810 ||| |||| Sbjct 94948 GGT-GAGC 94954 >seq954 Length=166441 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| | ||||| || ||||| || |||||| ||||||| || ||| ||||| Sbjct 95928 GGGGAGCGAATTGTGGCTTTTGCGGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCT 95987 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| |||||||||||||| | || || ||||| ||||| || | | ||||||||| Sbjct 95988 GCCATCTTTTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTG 96047 Query 117152 AT 117153 || Sbjct 96048 AT 96049 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 116583 TGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGC 116642 |||| || || |||||| | ||||| || | |||||||| || ||||||||||| ||| Sbjct 93830 TGCTCCGAGAAAACCCCAGACGGTTTGTCGTCTTCCCCATCCAGTACCCGGACATCTGGA 93889 Query 116643 GCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGG 116690 | |||||||| |||| |||| || | |||||| || |||||||||| Sbjct 93890 GGATGTACAAGCAGGCACAGGCTTCTTACTGGACGGTGGAGGAGGTGG 93937 >seq526 Length=228782 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| |||| |||||||| ||||||| || || || |||||||| || | ||| Sbjct 108575 GGTATCCCCCCGGATCAGCAACGTCTCATCTTTGCTGGAAAGCAGCTGGAGGATGGACGC 108516 Query 40852 ACCCTCAACGACTACAACATCCAGAAGG 40879 ||||| ||||||||||||||||||| Sbjct 108515 ACCCTGTCAGACTACAACATCCAGAAGG 108488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515116980510720