Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq5248 93.3 8e-14 >seq5248 Length=42889 Score = 93.3 bits (102), Expect = 8e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 51893 GAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCA 51952 |||| | |||| ||| | || || || || || || || |||| ||||| ||||||| Sbjct 24677 GAGCTCTGTGGTGGTATTTCATCTCTAAGGGCATCGAGTATCTGGACACGGTGTTTTTCA 24736 Query 51953 TACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGT 52012 | || ||||||||||| || ||||||| || || ||||| || || || | | |||| Sbjct 24737 TCCTGAGGAAAAAATTCAACCAGGTTACCTTCCTGCACGTCTACCACCACTGCAGCATGT 24796 Query 52013 TTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAG 52056 | || || | ||||| || || |||||| | || ||||| ||| Sbjct 24797 TCACGCTCTGGTGGATCGGCATCAAATGGGTGGCAGGAGGACAG 24840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923013637754880