Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq7384 104 3e-17 seq4066 96.9 4e-15 seq213 96.9 4e-15 seq5594 91.5 2e-13 seq9402 89.7 6e-13 seq3897 89.7 6e-13 >seq7384 Length=24330 Score = 104 bits (114), Expect = 3e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || |||| || | ||||||||||||| ||||| |||||||||||||||| |||| Sbjct 6227 AAAAAATTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 6168 Query 60117 TCACCACTATACTACCGAGGATTGAATATATA 60148 | ||||||||||| |||||| | ||||||| Sbjct 6167 TGTCCACTATACTAACGAGGAAGGGATATATA 6136 >seq4066 Length=58658 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || |||| || | ||||||||||||| ||||| |||||||||||||||| |||| Sbjct 1496 AAAAAATTACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 1437 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||| |||||| Sbjct 1436 TGTCCACTATACTAACGAGGA 1416 >seq213 Length=299168 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || ||||||||||||||| |||||||||||||| |||| || |||||||||| Sbjct 7791 TTACTCCCCGTCAGGGAATCGAACCCCGGTCTCCCGCGTGAAAGGC-GAAATACTCACCA 7733 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 7732 CTATACTAACGAGGA 7718 >seq5594 Length=38127 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| Sbjct 23898 AAAAAATACTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACT 23839 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||| |||||| Sbjct 23838 GTCCACTATACTAACGAGGA 23819 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||||| |||| || | ||||||||||||| ||||| |||||||||||||||| ||| Sbjct 27051 GAAAAATA--CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATA 26994 Query 60116 CTCACCACTATACTACCGAGGA 60137 || ||||||||||| |||||| Sbjct 26993 CTGTCCACTATACTAACGAGGA 26972 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 20452 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 20393 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 20392 TACTAACGAGGA 20381 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 30585 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 30644 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 30645 TACTAACGAGGA 30656 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 32968 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 33027 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 33028 TACTAACGAGGA 33039 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 35425 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 35484 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 35485 TACTAACGAGGA 35496 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 36414 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 36473 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 36474 TACTAACGAGGA 36485 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| |||| ||||||||||||||| ||||| |||||| Sbjct 19892 CTCCCCGTCGGGGAATCGAACCCCGGTCWWMCGCGTGACAGGCGGAGATACTGTCCACTA 19833 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 19832 TACTAACGAGGA 19821 >seq9402 Length=13363 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| |||||||||||||||| |||| |||||| |||||| Sbjct 12030 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAAGCGGGGATACTCTCCACTA 12089 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 12090 TACTAACGAGGA 12101 >seq3897 Length=60586 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 30529 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 30588 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 30589 TACTAACGAGGA 30600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571704151388160