Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq844 111 3e-19 >seq844 Length=176084 Score = 111 bits (122), Expect = 3e-19 Identities = 229/339 (68%), Gaps = 4/339 (1%) Strand=Plus/Plus Query 248802 CGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCT 248861 || || |||||| ||| | ||||| | ||||| || |||||| || || || | Sbjct 38846 CGACAGAGATTTCTCCTACAACTTCTTCGGCTTCAAGACTCTGGAGCGGTCCTACCTGTT 38905 Query 248862 CAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGG 248921 || || | ||||| | | || ||| ||||||||| | ||| ||||| | ||||| Sbjct 38906 GAAGATCAACGGCAAAGTGGCCGAGCGACCGCAGCACATGCTCATGAGAGTGTCCGTCGG 38965 Query 248922 GATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG--AGTGAACGC 248979 ||| |||||| ||||| || | | |||||||||| | || || ||| Sbjct 38966 GATCCACAAGATGGACATCGACGCAGCCATTGAGACGTACAACCTGCTGTCAGAGAAG-- 39023 Query 248980 TGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGC 249039 ||| | || || ||| | || |||||||||||||| || ||| || |||||| | Sbjct 39024 TGGTTCACCCACGCCTCCCCCACGCTCTTCAACGCAGGAACCAACAGGCCACAGCTGTCC 39083 Query 249040 TCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAA 249099 ||||| || || |||||| |||||||| |||| |||||||| |||||||| || Sbjct 39084 AGCTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATTTACGACACGCTGAAG 39143 Query 249100 CAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGT 249138 || || || || |||| || || ||||||||| Sbjct 39144 CAATGCGCCCTCATCTCCAAATCAGCCGGGGGAATCGGT 39182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073548038864896