Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq170 91.5 1e-13 >seq170 Length=344817 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || |||||||| || ||||||||||||| | || || |||||||| || Sbjct 171750 TGGAGGGTRGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCTTCCAGCTGC 171809 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || || || ||| | ||||||||| || || | Sbjct 171810 TTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 171869 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| ||||| | ||||||| |||| |||||| | ||||| || Sbjct 171870 GCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGAGTGATGGTCTTGCCAGTG 171929 Query 18303 AATGTTTTTACAAAAATTTGCAT-TTTTAAACTCTTATAAATG--GCTTCCGCGTT 18355 | || || ||||| || ||||| ||| | || | | ||||| | |||| |||| Sbjct 171930 AGGGTCTTCACAAAGATCTGCATGTTTGCACCTGTGAAAAATGAAGATTCCACGTT 171985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379270619696640