Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq410 123 2e-23 seq844 113 4e-20 seq170 107 2e-18 >seq410 Length=233677 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || ||| ||||||| || || || ||||| | ||| | ||||| || | ||| | Sbjct 229632 TTTCCACTCGTTTCATAAACAGGTCTGGGATCCACATGGCGAAAAACAGGTCTCTGGCCC 229573 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||||||||| ||||||||||| ||||| ||||| ||||| ||||| || ||||| Sbjct 229572 TCTGCTCCTCTTTACCGGTGTTCTTCTTCAACTCCAAGAAGTCAAACACATCGAAATGCC 229513 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| || || || || || ||||||| Sbjct 229512 ACGGCTCCAGGTACACAGCGAAGGCCCCGGGTCTCT 229477 Score = 116 bits (128), Expect = 3e-21 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| ||||| ||||||||||| || || || || |||||||| | || || || Sbjct 230161 CACCTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGT 230102 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| |||||||| || | ||||| | || |||||||||||||| ||||| Sbjct 230101 GCCCAGATTCTGYTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTATGGCGT 230042 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||| || ||| |||||| |||||||| || ||||| Sbjct 230041 GCCGGTTTCGGTCTGCGATTCGATGATGGCGTACCACA 230004 >seq844 Length=176084 Score = 113 bits (124), Expect = 4e-20 Identities = 218/317 (69%), Gaps = 10/317 (3%) Strand=Plus/Minus Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682 ||| || || ||| | ||||| || || | |||||||| ||||| |||||||| ||||| Sbjct 39182 ACCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCC 39123 Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742 ||||||||||| ||||| | |||| || ||| || |||| || | || || Sbjct 39122 TTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGT 39063 Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCA-TTC---GACATTAGAT 23798 | || ||| || || ||| |||||| || || ||| ||| |||| || | Sbjct 39062 TCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAA----CCACTTCTCTGACAGCAGGT 39007 Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCC-TCTCCGTGTATACCGATGGCGACGCGCATC 23857 ||||||| || ||||| || || |||||| ||| ||| || |||| || || | ||| Sbjct 39006 TGTACGTCTCAATGGCTGCGTCGATGTCCATCT-TGTGGATCCCGACGGACACTCTCATG 38948 Query 23858 ATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGC 23917 | ||||| || |||| |||| || |||||| || || ||||| || || || | | Sbjct 38947 AGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCC 38888 Query 23918 ATCGTTTTAAATCCAAA 23934 | || || || || || Sbjct 38887 AGAGTCTTGAAGCCGAA 38871 >seq170 Length=344817 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || |||||||| Sbjct 171725 CATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAACCCAG 171666 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || ||| | || ||||||||||||| | || || || || Sbjct 171665 CGACACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCA 171606 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || |||||||| ||| ||||||| || | ||| || || Sbjct 171605 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 171546 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || || || || || || ||||| || || | |||||||||||| Sbjct 171545 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGGGGCGGT 171497 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| || || ||||| || ||||| | || || || | Sbjct 171957 CAAACATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGC 171898 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| | || | || || | || ||||||||||||| | || || | Sbjct 171897 CCAGCGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAG 171838 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||| | || || || |||||||| ||| ||||||| | || | ||| | Sbjct 171837 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACT 171778 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | ||||| || |||||||| || || ||||| || || | |||||||| || Sbjct 171777 ACAACATCCAGAAAGAATCYACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 171726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445677959946240