Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq844 224 1e-53 >seq844 Length=176084 Score = 224 bits (248), Expect = 1e-53 Identities = 478/712 (67%), Gaps = 2/712 (0%) Strand=Plus/Minus Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604 ||| |||||||| || ||| ||||| | |||||| | || | |||||| || ||||| Sbjct 39182 ACCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCC 39123 Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664 ||| ||||| || || ||||| || || || ||||| |||| || | | | || Sbjct 39122 TTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGT 39063 Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63724 ||| || || || | || || || ||||| || ||||| || || || || || ||||| Sbjct 39062 TCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTA 39003 Query 63725 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63784 ||||||||| |||| ||| || ||| | || || || || | || | ||| | ||| Sbjct 39002 CGTCTCAATGGCTGCGTCGATGTCCATCTTGTGGATCCCGACGGACACTCTCATGAGCAT 38943 Query 63785 GTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63844 |||||| |||| || | | |||| ||| || ||||||| |||||| |||| ||| Sbjct 38942 GTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAGT 38883 Query 63845 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTT 63904 || || || || ||||||| || || |||| ||| |||| || |||| ||||| Sbjct 38882 CTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCG 38823 Query 63905 ATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCC 63963 || || | | | ||| || || | || | ||| || || || || || || Sbjct 38822 GTCTTTGTTCTCGAGAACGATGTCGAGCGT-CTCCTTGGAGATCATGGGCGAGTGGCGGT 38764 Query 63964 CATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttG 64023 ||||| || || | |||||| | | ||||||||||| || || || | || || | Sbjct 38763 CATTTAAGGGGTTGATGTAGTTGTACAGGTCCTCCATCACGTCRCTGAACACCTTCTTCG 38704 Query 64024 TTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTT 64083 | || ||||| || ||||| | ||| || | || || || ||||| || || || || | Sbjct 38703 TCTCTTTGTGCAGGTTTGAGACGGCGATCCGTGCAGCGAGTATGGCGTAGTCGGGGTGCT 38644 Query 64084 GTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTC 64143 || || |||||| | || || || ||||| ||||| | || || || || || | Sbjct 38643 TAGTTGTGAGAGTGGCGGTGATCTCAGCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGC 38584 Query 64144 CATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTGT 64203 | | || | || || || |||||||| | || | ||||| | || | || Sbjct 38583 CGCTGTACAAACCCTGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCAGAGT 38524 Query 64204 TTAAGCCATAGCACAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64255 | | || ||||||| || || ||| | |||||||| || |||||||| Sbjct 38523 TCAGTCCGTAGCACAGCTTCTGGATGCGACAGGTGATTTTGTCGAACATGAC 38472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629692644188160