Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq844 219 6e-52 seq954 93.3 6e-14 seq410 87.8 2e-12 >seq844 Length=176084 Score = 219 bits (242), Expect = 6e-52 Identities = 507/762 (67%), Gaps = 2/762 (0%) Strand=Plus/Minus Query 66288 TTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCC 66347 ||||| |||| ||| ||||| || ||| | || || || | | ||| |||||| Sbjct 39232 TTGGTGCCGGCGATGTAGCTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCGATTCCC 39173 Query 66348 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTA 66407 || || ||| ||||| | |||||| | || | ||| || || ||||| || || || Sbjct 39172 CCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTG 39113 Query 66408 TCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 66467 || || ||||| || || || ||||| |||| || | | | ||||| || || Sbjct 39112 TCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTG 39053 Query 66468 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA 66527 || | || || || ||||| || ||||| || || || || || |||||||||||||| Sbjct 39052 AAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATG 38993 Query 66528 GCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGT 66587 |||| ||| || ||| | || || || || | || | ||| | ||||||||| ||| Sbjct 38992 GCTGCGTCGATGTCCATCTTGTGGATCCCGACGGACACTCTCATGAGCATGTGCTGCGGT 38933 Query 66588 CTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCA 66647 | || | | ||| ||| || ||||||| |||||| |||| ||| || || || Sbjct 38932 CGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCG 38873 Query 66648 AAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATAT 66707 || ||||||| || || |||| ||| |||| || |||||||||| || || | Sbjct 38872 AAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTC 38813 Query 66708 TTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGG 66766 | | ||| | || | || | ||| || || || || || || ||||| || Sbjct 38812 TCGAGAACGATGTCGAGCGT-CTCCTTGGAGATCATGGGCGAGTGGCGGTCATTTAAGGG 38754 Query 66767 ATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTG 66826 |||| |||||| | | ||||||||||| || || || | || || || |||||||| Sbjct 38753 GTTGATGTAGTTGTACAGGTCCTCCATCACGTCRCTGAACACCTTCTTCGTCTCTTTGTG 38694 Query 66827 TAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACA 66886 || ||||| ||||| || | || || | ||||| || || || || | || || Sbjct 38693 CAGGTTTGAGACGGCGATCCGTGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAG 38634 Query 66887 AGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATAT 66946 |||||| | || || || ||||| ||||| | || || || || || || | || | Sbjct 38633 AGTGGCGGTGATCTCAGCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAA 38574 Query 66947 TCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATA 67006 || ||||| |||||||| | || | ||||| | |||| ||| | || || Sbjct 38573 ACCCTGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCAGAGTTCAGTCCGTA 38514 Query 67007 ACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGAC 67048 || | || || ||| | |||||||| || |||||||| Sbjct 38513 GCACAGCTTCTGGATGCGACAGGTGATTTTGTCGAACATGAC 38472 >seq954 Length=166441 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| || | |||||| | |||||||| | || || || |||||||| || | ||| | Sbjct 96063 CCTCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCT 96004 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| |||| || ||||| || || ||||| || || || ||||||||||| | Sbjct 96003 TGAGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCCGCAAAAG 95944 Query 36300 CAATAAGTCTCTCTCC 36315 | | || || ||| || Sbjct 95943 CCACAATTCGCTCCCC 95928 >seq410 Length=233677 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| || || |||||||||||||| || || || || | || || | | Sbjct 227048 CACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCAGGA 226989 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||| || || |||| || || |||||||| | || |||||||||||||||| Sbjct 226988 GAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGTCCA 226929 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 || || || || || ||| | || | || ||||| |||||||| Sbjct 226928 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 226883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658042218516480