Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq844 201 2e-46 seq410 84.2 3e-11 >seq844 Length=176084 Score = 201 bits (222), Expect = 2e-46 Identities = 473/712 (66%), Gaps = 2/712 (0%) Strand=Plus/Minus Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 ||| |||||||| || ||| ||||| | |||||| | || | ||| || || ||||| Sbjct 39182 ACCGATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCC 39123 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 || ||||| || || ||||| || || || ||||| |||| || | | | || Sbjct 39122 TTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGT 39063 Query 80337 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 80396 ||| || || || | || || || ||||| || ||||| || || ||||| || ||||| Sbjct 39062 TCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTA 39003 Query 80397 CGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACAT 80456 ||||||||| |||| || || ||| | || || || || | || | ||| | ||| Sbjct 39002 CGTCTCAATGGCTGCGTCGATGTCCATCTTGTGGATCCCGACGGACACTCTCATGAGCAT 38943 Query 80457 GTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 |||||| |||| || | | ||| || || ||||||| ||| || |||| ||| Sbjct 38942 GTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAGT 38883 Query 80517 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 80576 || || || || ||||||| || || |||| ||| |||| || |||||||||| Sbjct 38882 CTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCG 38823 Query 80577 ATCCTTATATTTGTTAACTACATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCC 80635 || || | | | ||| | || | || | ||| || || || || || || Sbjct 38822 GTCTTTGTTCTCGAGAACGATGTCGAGCGT-CTCCTTGGAGATCATGGGCGAGTGGCGGT 38764 Query 80636 CATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttG 80695 ||||| || || | |||||| | | ||||||||||| || || || | || || | Sbjct 38763 CATTTAAGGGGTTGATGTAGTTGTACAGGTCCTCCATCACGTCRCTGAACACCTTCTTCG 38704 Query 80696 TTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTT 80755 | || ||||| || ||||| ||||| || | || || | ||||| || || || || | Sbjct 38703 TCTCTTTGTGCAGGTTTGAGACGGCGATCCGTGCAGCGAGTATGGCGTAGTCGGGGTGCT 38644 Query 80756 GTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTC 80815 || || |||||| | || || || ||||| ||||| | || || || || || | Sbjct 38643 TAGTTGTGAGAGTGGCGGTGATCTCAGCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGC 38584 Query 80816 CATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGT 80875 | | || | || ||||| |||||||| | || | ||||| | |||| || Sbjct 38583 CGCTGTACAAACCCTGGATCACCTTCATGGTGATCTGGGCCGGATCCACGAAGTCAGAGT 38524 Query 80876 TTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 80927 | | || || || | || || ||| | |||||||| || |||||||| Sbjct 38523 TCAGTCCGTAGCACAGCTTCTGGATGCGACAGGTGATTTTGTCGAACATGAC 38472 >seq410 Length=233677 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| || || || ||||||||||| || || || || | || || | | Sbjct 227048 CACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCAGGA 226989 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 ||||| || || |||| || || |||||||| | || |||||||||||||||| Sbjct 226988 GAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGTCCA 226929 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || || || || || ||| | || | || ||||| |||||||| Sbjct 226928 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 226883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718126295470080