Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq844 203 4e-47 seq954 96.9 5e-15 seq410 93.3 6e-14 >seq844 Length=176084 Score = 203 bits (224), Expect = 4e-47 Identities = 453/678 (67%), Gaps = 2/678 (0%) Strand=Plus/Minus Query 72250 TTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCC 72309 ||||| |||| ||| ||||| || | | | || ||| || | | ||| |||||| Sbjct 39232 TTGGTGCCGGCGATGTAGCTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCGATTCCC 39173 Query 72310 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTA 72369 || || ||| ||||| | |||||| | || | ||| || || ||||| || || || Sbjct 39172 CCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTG 39113 Query 72370 TCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 72429 || || ||||| || || || ||||| |||| || | | | ||||| || || Sbjct 39112 TCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTG 39053 Query 72430 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATA 72489 || | || || || ||||| || ||||| || || ||||| || |||||||||||||| Sbjct 39052 AAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATG 38993 Query 72490 GCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGT 72549 |||| || || ||| | || || || || | || | ||| | ||| ||||| ||| Sbjct 38992 GCTGCGTCGATGTCCATCTTGTGGATCCCGACGGACACTCTCATGAGCATGTGCTGCGGT 38933 Query 72550 CTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCA 72609 | || | | ||| || || ||||||| |||||| |||| ||| || || || Sbjct 38932 CGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCG 38873 Query 72610 AAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATAT 72669 || ||||||| || || |||| ||| |||| || |||| ||||| || || | Sbjct 38872 AAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTC 38813 Query 72670 TTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGG 72728 | | ||| || || | || | ||| || || || || || || ||||| || Sbjct 38812 TCGAGAACGATGTCGAGCGT-CTCCTTGGAGATCATGGGCGAGTGGCGGTCATTTAAGGG 38754 Query 72729 ATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTG 72788 || | |||||| | | ||||||||||| || || || | || || || || ||||| Sbjct 38753 GTTGATGTAGTTGTACAGGTCCTCCATCACGTCRCTGAACACCTTCTTCGTCTCTTTGTG 38694 Query 72789 TAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACA 72848 || ||||| ||||| || | || || || ||||| || || || || | || || Sbjct 38693 CAGGTTTGAGACGGCGATCCGTGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAG 38634 Query 72849 AGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATAT 72908 |||||| | || || || ||||| ||||| | || || || || || || | || | Sbjct 38633 AGTGGCGGTGATCTCAGCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAA 38574 Query 72909 TCCTTGGATAACCTTCAT 72926 || ||||| |||||||| Sbjct 38573 ACCCTGGATCACCTTCAT 38556 >seq954 Length=166441 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| | |||||| | |||||||| | || || || |||||||| || | ||| | Sbjct 96063 CCTCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCT 96004 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || | || ||||| || || |||||||| || || ||||||||||| | Sbjct 96003 TGAGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCCGCAAAAG 95944 Query 42207 CAATAAGTCTCTCTCC 42222 | | || || ||| || Sbjct 95943 CCACAATTCGCTCCCC 95928 >seq410 Length=233677 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || || || ||||||||||| || || || || | || || || | Sbjct 227048 CACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCAGGA 226989 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||| || || |||| || || |||||||| | ||||||||||||||||||| Sbjct 226988 GAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGTCCA 226929 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || || ||| | || | || ||||| |||||||| Sbjct 226928 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 226883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671006045982720