Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq2751 136 6e-27 seq2358 136 6e-27 seq4015 86.0 9e-12 >seq2751 Length=74470 Score = 136 bits (150), Expect = 6e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||||||| | || |||||| || ||||| ||||| || |||||||| |||| ||| Sbjct 41925 TTGACGATGTCGAAGCCCACGCTGCCTCCGAACGTGCTCGGCTTCCAGTACTCCGGCGAG 41866 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| ||| |||| | ||| |||||||| | || ||||||| ||| | ||| || Sbjct 41865 CAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCATGGTC 41806 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || ||||||||||||| |||||||| ||||||| | || | ||| | ||||| Sbjct 41805 TCCCCAAAGATGGCGTTGGTCCGGGGCTTCTCCACCAGCAGACCCGGGTAGAGTTCCACG 41746 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || |||| || || || | || || | || || ||||| || ||||||| Sbjct 41745 GCGTCGACGTGCCCATAGAACTCCTCCAGCACTGCTGCCATTTCTTTCTCTCCTG 41691 Score = 95.1 bits (104), Expect = 2e-14 Identities = 181/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| || ||||| || || || || ||||| || || || | | |||||||| | Sbjct 40806 CTTACCCGTCCAGCGATCTGATTGGTAAACGACTCCACGAGGTTGCCGATGCCGTGCTCC 40747 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCA 9441 | | | ||| |||||| | || || | | |||| |||| | | | ||||| | Sbjct 40746 GTCACCACGGAGTTGTTGAAGACAAACTGTTTATAGTTGTACTCTTTCTCCTCAATGTGG 40687 Query 9442 AACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9501 || | ||| ||||| |||| |||||||| |||| |||| |||||||| | || || Sbjct 40686 AAAGTATCGGGCATCAGAGGGTGCCAGTGGTACAGGGTGTTGAACTCGGACGAGATGCGG 40627 Query 9502 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560 || ||||||||||| || | || ||||| ||||| | |||| | || |||| Sbjct 40626 TTCTGGTACTGGAAGCGCTG-GTTGAACAGCAGCTCGGGGTCAAACTTGAGCTTGAAGTT 40568 Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584 |||||||| || ||||| || || Sbjct 40567 ATAGCCGCTCAGGTGCTGCACGTA 40544 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 9676 TTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGA 9735 |||| || || ||||| | ||||||||| | |||||||| || ||||||||||| || Sbjct 39893 TTCAACACGTCACACACCCGGTTGTGTTCTCGTAGCCAGATGGTGGCGTACATCATCAGG 39834 Query 9736 CCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCG 9795 || || |||||||| || ||||| || || ||||| | || | ||||| || | Sbjct 39833 CCGGGGACCAGGCCGAACGCCTCGTGGCCCACAGCGAAGCGGTGAGGGTCGGGAACGTGA 39774 Query 9796 GGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCA 9855 ||||| ||| ||||| || || || || || | |||||||||| || || || Sbjct 39773 GGAGGGTAGTGCATGTCAACGCCCACCTCCTTTACTGTTGGGGGATACACCTCTCCATCC 39714 Query 9856 ATAATCTG 9863 | || ||| Sbjct 39713 AGAACCTG 39706 >seq2358 Length=92096 Score = 136 bits (150), Expect = 6e-27 Identities = 179/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||||| ||| |||| || || || || | ||| ||| | |||||||| Sbjct 46274 GGACACCACTTGGTGTTGAGGCACACCAGTTTCTTCAAAGTGGCAGTTTTGACGATATTG 46333 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||| ||||| || ||||||||||| |||||||| | |||||||||||| ||| Sbjct 46334 AAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTT 46393 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 |||| |||||||| ||||| || ||||| |||| ||| | || |||||||| ||||| Sbjct 46394 GCCAGCAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAAGATA 46453 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | | || || | ||||| | || | |||| ||| ||||||| ||| || ||||| Sbjct 46454 CCAGTAGGGCGTGCTTTTTCTAGTAAAAGGCCGGGGTAAAACTCCAAAGCATCTATGTCA 46513 Query 8933 CCGTAAAG 8940 ||||| || Sbjct 46514 CCGTAGAG 46521 Score = 132 bits (146), Expect = 7e-26 Identities = 178/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||||| ||| |||| || || || || | ||| | | | |||||||| Sbjct 60479 GGACACCACTTGGTGTTGAGGCACACCAGTTTCTTCAAAGTGGAAGTTTTGACGATATTG 60538 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||| ||||| || ||||||||||| |||||||| | |||||||||||| ||| Sbjct 60539 AAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTT 60598 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 ||| ||||| || ||||| || ||||| |||| ||| | || |||||||| || | Sbjct 60599 CCCAGCAGGCCCTTCAGGGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAACAGT 60658 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 ||||||||| | || |||| || || |||| ||| ||||||| ||| || ||||| Sbjct 60659 CTGTTGGGACGTGTTTTCTCCAGCAGGATGCCGGGGTAGAACTCCAAAGCATCTATGTCA 60718 Query 8933 CCGTAAAG 8940 ||||| || Sbjct 60719 CCGTAGAG 60726 >seq4015 Length=56382 Score = 86.0 bits (94), Expect = 9e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| || || | || || ||||||||||| ||||||||| | || || || || || Sbjct 12943 CAAAGCCGACTTTGCCTCCAAAGGTGCTGGGCTTCCAGTAATCTGGAGAACATATAGGGT 13002 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| ||||||||| || || || || || |||| ||| | |||||||| || || | Sbjct 13003 TTCCCAGGAGGCCTTTAAGAGAGAAGGGGGCGCCCATCTCTATCATGCTCTCTCCAAATA 13062 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 |||| | || | |||| || || || | ||| || || ||||| || |||| Sbjct 13063 TGGCCCCCTGTCGTGTTCCCTCCAACAGTAAACCAGGGTAAAATTCAACAGCATCAATGT 13122 Query 8931 CTCCGTA 8937 | ||||| Sbjct 13123 CACCGTA 13129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708384228679680