Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20]
15,872 sequences; 746,044,620 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq170 111 1e-19
>seq170
Length=344817
Score = 111 bits (122), Expect = 1e-19
Identities = 149/206 (72%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868
|| ||||| || || | ||| || ||| | || || || ||| |||||||| || |
Sbjct 171756 GTRGATTCTTTCTGGATGTTGTAGTCGG--AGAGGGTGCGACCATCTTCCAGCTGCTTGC 171813
Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928
| ||||||| | || ||||| ||||| ||||| ||||| ||||| | || || ||||
Sbjct 171814 CAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCT 171873
Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988
| ||| | | ||||| | | ||||| |||| |||||||| || ||||| || |
Sbjct 171874 TCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGG 171933
Query 94989 TTTTCACAAAGATCTGCATGCTTACA 95014
| |||||||||||||||||| || ||
Sbjct 171934 TCTTCACAAAGATCTGCATGTTTGCA 171959
Score = 98.7 bits (108), Expect = 9e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || |||| |||| ||| | || | || || ||||| || | ||| || |||
Sbjct 171498 CCGCCCCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 171557
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| |||||||| || || ||||||| | || ||||||||||| |||
Sbjct 171558 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 171617
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| ||||| | || || || || ||| | | ||||| | | || ||
Sbjct 171618 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACC 171677
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| | |||||||| || ||||| || || || || |||||||||||||
Sbjct 171678 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATGC 171726
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448202259025920
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |