Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20nigrocinctus_20[genbank_20GCA_5F000475235.2_202016-12-20] 15,872 sequences; 746,044,620 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq13464 176 7e-40 seq2584 172 9e-39 seq8995 159 5e-35 seq8246 127 3e-25 seq1576 89.7 8e-14 >seq13464 Length=2054 Score = 176 bits (194), Expect = 7e-40 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| |||||||| || || || || Sbjct 978 CGCCAAGCGTCACCGTAAAGTGCTCCGTGATAACATCCAGGGAATCACYAAACCCGCCAT 1037 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| ||||| |||||| |||| || || |||| || |||| Sbjct 1038 CCGCCGTCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 1097 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 1098 CCGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGTGATGCYGTCACCTACACCGA 1157 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| |||||||| | || || || |||| | || || Sbjct 1158 GCACGCCAAGAGGAAGACTGTGACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 1217 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 1218 CCGCACCCTGTACGGCTTCGGAGGTTAA 1245 >seq2584 Length=92165 Score = 172 bits (190), Expect = 9e-39 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| || ||||| || || || || Sbjct 10317 CGCCAAGCGTCACCGTAAAGTGCTCCGTGATAACATCCAGGGRATCACYAAACCCGCCAT 10258 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| ||||| |||||| |||| || || |||| || |||| Sbjct 10257 CCGCCGTCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 10198 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 10197 CCGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGTGATGCCGTCACCTACACCGA 10138 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||| | ||||| || ||| |||||||| | || || || |||| | || || Sbjct 10137 GCACGCAAAAAGGAAGACCGTGACCGCCATGGATGTGGTGTACGCTCTGAAGAGGCAGGG 10078 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | |||| || || ||| | ||| Sbjct 10077 CCGCACCCTTTACGGCTTCGGAGGATAA 10050 >seq8995 Length=12519 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| || ||||| || || || || Sbjct 4747 CGCCAAGCGTCACCGTAAAGTGCTCCGTGATAACATCCAGGGGATCACTAAACCCGCCAT 4806 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| ||||| |||||| |||| || || |||| || |||| Sbjct 4807 CCGCCGTCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 4866 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||| | | | ||| |||| |||||| || ||| ||||| Sbjct 4867 CCGCGGTGTGCTCAAGGTGTTCTTGGAAAACGTGATCCGTGATGCCGTCACCTACACCGA 4926 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||| | |||||||| ||| ||||||| | || || || |||| | || || Sbjct 4927 GCACGCAAAAAGGAAGACTGTGACCGCCATGGACGTGGTGTACGCTCTGAAGAGGCAGGG 4986 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | ||||| || ||| | ||| Sbjct 4987 CCGCACCCTGTATGGCTTCGGAGGATAA 5014 >seq8246 Length=20724 Score = 127 bits (140), Expect = 3e-25 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| ||||||||||| || || || Sbjct 8387 CGCCAAGCGTCACCGTAAAGTGCTCCGTGATAACATCCAGGGAATCACCAAACCCGCCAT 8446 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| ||||| |||||| |||| || || |||| || |||| Sbjct 8447 CCGCCGTCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 8506 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACC 16609 || | ||| | ||| | ||||| ||| ||| |||| |||||| || ||| ||| Sbjct 8507 CCGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTGATCCGTGATGCCGTCACCTACACC 8564 >seq1576 Length=126086 Score = 89.7 bits (98), Expect = 8e-14 Identities = 144/209 (69%), Gaps = 10/209 (5%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||| ||||||| || |||||||| || || ||||| | |||||||| || ||| Sbjct 60464 CTCCGTGATGACATCCAGGGGATCACCAAACCCGCCATCCGCCAGCTGGCTCGCCGCGGT 60523 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||| |||| | || |||| || |||| || | ||| | ||| ||| Sbjct 60524 GGA----------TCTCCTGTCTGATCTACGAGGAGACCCGCGGTGTGCTAAAGGGTTTC 60573 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| ||||| || || ||| ||| ||||||||||| || | ||||| || Sbjct 60574 CTGGAGAACGTGATCCAGGACGCCGTCCCCTACACCGAGCACGCCAAGAGGAAGACGGTG 60633 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAA 16662 || ||||| || | ||| | || |||| Sbjct 60634 CCCGCCATGTATGTGGTCCACGCTCTGAA 60662 Score = 89.7 bits (98), Expect = 8e-14 Identities = 144/209 (69%), Gaps = 10/209 (5%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||| ||||||| || |||||||| || || ||||| | |||||||| || ||| Sbjct 62080 CTCCGTGATGACATCCAGGGGATCACCAAACCCGCCATCCGCCAGCTGGCTCGCCGCGGT 62139 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||| |||| | || |||| || |||| || | ||| | ||| ||| Sbjct 62140 GGA----------TCTCCTGTCTGATCTACGAGGAGACCCGCGGTGTGCTAAAGGGTTTC 62189 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| ||||| || || ||| ||| ||||||||||| || | ||||| || Sbjct 62190 CTGGAGAACGTGATCCAGGACGCCGTCCCCTACACCGAGCACGCCAAGAGGAAGACGGTG 62249 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAA 16662 || ||||| || | ||| | || |||| Sbjct 62250 CCCGCCATGTATGTGGTCCACGCTCTGAA 62278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79060688119296